RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 IGLV2-18A0A075B6J9 118 aa2.56□□□□□ -2
USP53-205ENST00000509769 DEFB131BA0A096LNP1 70 aa2.56□□□□□ -2
USP53-205ENST00000509769 IGLV1-47P01700 117 aa2.56□□□□□ -2
USP53-205ENST00000509769 IGLV2-14P01704 120 aa2.56□□□□□ -2
USP53-205ENST00000509769 KIAA0087Q14695 138 aa2.56□□□□□ -2
USP53-205ENST00000509769 LYPD2Q6UXB3 125 aa2.56□□□□□ -2
USP53-205ENST00000509769 Q8NBF4 154 aa2.56□□□□□ -2
USP53-205ENST00000509769 KLK12Q9UKR0 248 aa2.56□□□□□ -2
USP53-205ENST00000509769 PLXNB3Q9ULL4 1909 aa2.56□□□□□ -2
USP53-205ENST00000509769 TDRD15B5MCY1 1934 aaKnown RBP2.56□□□□□ -2
USP53-205ENST00000509769 NCKAP5O14513 1909 aa2.56□□□□□ -2
USP53-205ENST00000509769 CLPSL2Q6UWE3 100 aa2.56□□□□□ -2
USP53-205ENST00000509769 FASNP49327 2511 aaKnown RBP2.56□□□□□ -2
USP53-205ENST00000509769 NUP214P35658 2090 aaPredicted RBP2.56□□□□□ -2
USP53-205ENST00000509769 HEATR5AQ86XA9 2040 aa2.56□□□□□ -2
USP53-205ENST00000509769 PRAC2D3DTV9 90 aa2.56□□□□□ -2
USP53-205ENST00000509769 LINC00242Q5T6M2 205 aa2.56□□□□□ -2
USP53-205ENST00000509769 NACAE9PAV3 2078 aa2.55□□□□□ -2
USP53-205ENST00000509769 DOCK11Q5JSL3 2073 aa2.55□□□□□ -2
USP53-205ENST00000509769 A8MWP4 228 aa2.55□□□□□ -2
USP53-205ENST00000509769 G3V318 75 aa2.55□□□□□ -2
USP53-205ENST00000509769 SSBP3-AS1Q7Z2R9 100 aa2.55□□□□□ -2
USP53-205ENST00000509769 RITA1Q96K30 269 aa2.55□□□□□ -2
USP53-205ENST00000509769 Q96MF0 132 aa2.55□□□□□ -2
USP53-205ENST00000509769 ARID2Q68CP9 1835 aa2.55□□□□□ -2
USP53-205ENST00000509769 DEFB113Q30KQ7 82 aa2.55□□□□□ -2
USP53-205ENST00000509769 PCOTHQ58A44 107 aa2.55□□□□□ -2
USP53-205ENST00000509769 PHF5AQ7RTV0 110 aaKnown RBP2.55□□□□□ -2
USP53-205ENST00000509769 CRIP1P50238 77 aa2.55□□□□□ -2
USP53-205ENST00000509769 DEFB104AQ8WTQ1 72 aa2.55□□□□□ -2
USP53-205ENST00000509769 A6NDX4 124 aa2.54□□□□□ -2
USP53-205ENST00000509769 ODF3BA8MYP8 253 aa2.54□□□□□ -2
USP53-205ENST00000509769 CEMP1Q6PRD7 247 aaPredicted RBP2.54□□□□□ -2
USP53-205ENST00000509769 MAP6D1Q9H9H5 199 aa2.54□□□□□ -2
USP53-205ENST00000509769 SPTBN4Q9H254 2564 aa2.54□□□□□ -2
USP53-205ENST00000509769 EPM2AB3EWF7 344 aa2.54□□□□□ -2
USP53-205ENST00000509769 LY6G6DO95868 133 aa2.54□□□□□ -2
USP53-205ENST00000509769 ZNF295-AS1Q8N0V1 137 aa2.54□□□□□ -2
USP53-205ENST00000509769 URB1O60287 2271 aaKnown RBP2.54□□□□□ -2
USP53-205ENST00000509769 SRCAPQ6ZRS2 3230 aa2.54□□□□□ -2
USP53-205ENST00000509769 IGLV10-54A0A075B6I4 117 aa2.54□□□□□ -2
USP53-205ENST00000509769 ARTNQ5T4W7 220 aa2.54□□□□□ -2
USP53-205ENST00000509769 UNQ9165/PRO28630Q6UXU0 137 aa2.54□□□□□ -2
USP53-205ENST00000509769 COL6A6A6NMZ7 2263 aa2.54□□□□□ -2
USP53-205ENST00000509769 ABCA2Q9BZC7 2435 aa2.54□□□□□ -2
USP53-205ENST00000509769 SPAG17Q6Q759 2223 aa2.54□□□□□ -2
USP53-205ENST00000509769 CKAP5Q14008 2032 aa2.54□□□□□ -2
USP53-205ENST00000509769 A0A0J9YWU9 116 aa2.54□□□□□ -2
USP53-205ENST00000509769 CEP250Q9BV73 2442 aa2.54□□□□□ -2
USP53-205ENST00000509769 IGHV4-31P0DP07 118 aa2.53□□□□□ -2
USP53-205ENST00000509769 ARID1BQ8NFD5 2236 aaPredicted RBP2.53□□□□□ -2
USP53-205ENST00000509769 CACNA1IQ9P0X4 2223 aa2.53□□□□□ -2
USP53-205ENST00000509769 DOCK8Q8NF50 2099 aa2.53□□□□□ -2
USP53-205ENST00000509769 EP300Q09472 2414 aaPredicted RBP2.53□□□□□ -2
USP53-205ENST00000509769 KRTAP16-1A8MUX0 517 aa2.53□□□□□ -2
USP53-205ENST00000509769 C22orf24Q9Y442 160 aa2.53□□□□□ -2
USP53-205ENST00000509769 KIAA1549LQ6ZVL6 1849 aa2.53□□□□□ -2
USP53-205ENST00000509769 IGHV4-61A0A0C4DH41 118 aa2.53□□□□□ -2
USP53-205ENST00000509769 ZNRD1Q9P1U0 126 aa2.53□□□□□ -2
USP53-205ENST00000509769 FAM215AQ9Y5M1 114 aa2.53□□□□□ -2
USP53-205ENST00000509769 KIF25-AS1Q9Y6Z4 181 aa2.53□□□□□ -2
USP53-205ENST00000509769 A0A096LNJ9 63 aa2.53□□□□□ -2.01
USP53-205ENST00000509769 IGHV6-1A0A0B4J1U7 121 aa2.53□□□□□ -2.01
USP53-205ENST00000509769 F8W735 103 aaPredicted RBP2.53□□□□□ -2.01
USP53-205ENST00000509769 LINC01558Q9Y6Z2 57 aa2.53□□□□□ -2.01
USP53-205ENST00000509769 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.52□□□□□ -2.01
USP53-205ENST00000509769 PINLYPA6NC86 204 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 Q6ZSV7 163 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 X6R8D5 127 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 MYLKQ15746 1914 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 IGLV1-50A0A075B6I6 118 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 A0A087WSZ3 146 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 LINC00483Q53H64 154 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 TMEM131Q92545 1883 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 TNP2Q05952 138 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 FAM104AQ969W3 186 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 C2CD3Q4AC94 2353 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 IGLV7-46A0A075B6I9 117 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 TSPEAR-AS2P59090 65 aa2.52□□□□□ -2.01
USP53-205ENST00000509769 CNOT1A5YKK6 2376 aaKnown RBP2.52□□□□□ -2.01
USP53-205ENST00000509769 ARHGEF17Q96PE2 2063 aaPredicted RBP2.51□□□□□ -2.01
USP53-205ENST00000509769 FSHBP01225 129 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 Q6ZRP5 223 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 SPTBP11277 2137 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 GVQW2A0A096LPI5 108 aaPredicted RBP2.51□□□□□ -2.01
USP53-205ENST00000509769 ADORA2A-AS1P86434 159 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 ADAMTSL4-AS1Q5T5F5 129 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 OBSL1O75147 1896 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 BRD3OSQ6XYD6 125 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 LINC00167Q96N53 147 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 LINC00588Q9Y4M8 146 aa2.51□□□□□ -2.01
USP53-205ENST00000509769 MYO18BQ8IUG5 2567 aa2.5□□□□□ -2.01
USP53-205ENST00000509769 PRLHP81277 87 aa2.5□□□□□ -2.01
USP53-205ENST00000509769 CSNK1G2-AS1Q8NCQ2 148 aa2.5□□□□□ -2.01
USP53-205ENST00000509769 MRPL34Q9BQ48 92 aaKnown RBP2.5□□□□□ -2.01
USP53-205ENST00000509769 Q5XG85 94 aa2.5□□□□□ -2.01
USP53-205ENST00000509769 LINC00337Q8N6G1 96 aa2.5□□□□□ -2.01
USP53-205ENST00000509769 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.5□□□□□ -2.01
USP53-205ENST00000509769 FREM3P0C091 2139 aa2.5□□□□□ -2.01
USP53-205ENST00000509769 A0A096LPF7 62 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms