RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 TRAV13-2A0A0B4J235 113 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 GAGE12JA6NER3 117 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 GAGE7O76087 117 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 PRSS2P07478 247 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 GAGE12FP0CL80 117 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 GAGE12GP0CL81 117 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 GAGE12IP0CL82 117 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 CXCL5P42830 114 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 DEFB131AP59861 70 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 RPL36AP83881 106 aaKnown RBP4.17□□□□□ -1.74
VPS41-214ENST00000490924 GAGE4Q13068 117 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 DEFB114Q30KQ6 69 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 KRTAP21-3Q3LHN1 58 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 TTC32Q5I0X7 151 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 ADAMTSL4-AS1Q5T5F5 129 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 DGAT2L7PQ6IED9 249 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 LINC01561Q8N1V8 128 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 C15orf53Q8NAA6 179 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 LINC00308Q8TCZ7 52 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 RPL36ALQ969Q0 106 aaKnown RBP4.17□□□□□ -1.74
VPS41-214ENST00000490924 TMEM101Q96IK0 257 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 OPRPNQ99935 248 aaPredicted RBP4.17□□□□□ -1.74
VPS41-214ENST00000490924 MAP6D1Q9H9H5 199 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 AKAP6Q13023 2319 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 C2CD3Q4AC94 2353 aa4.17□□□□□ -1.74
VPS41-214ENST00000490924 IGHV3OR16-12A0A075B7B8 117 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 TEX49A0A1B0GTD5 131 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 TRBV6-4A0A1B0GX49 114 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 RBMY1BA6NDE4 496 aaKnown RBP4.16□□□□□ -1.74
VPS41-214ENST00000490924 RBMY1EA6NEQ0 496 aaKnown RBP4.16□□□□□ -1.74
VPS41-214ENST00000490924 SMIM1B2RUZ4 78 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 K7EQD1 137 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 RBMY1DP0C7P1 496 aaKnown RBP4.16□□□□□ -1.74
VPS41-214ENST00000490924 LINC00242Q5T6M2 205 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 LINC00643Q86TS7 51 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 LINC01587Q99440 93 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 CDKN2A-AS1Q9UH64 79 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 ITPR2Q14571 2701 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 DOPEY2Q9Y3R5 2298 aa4.16□□□□□ -1.74
VPS41-214ENST00000490924 CELSR2Q9HCU4 2923 aa4.15□□□□□ -1.74
VPS41-214ENST00000490924 TRAV8-3A0A0A6YYJ7 113 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 A0A1B0GX51 115 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 F5H768 121 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 H0YGX0 51 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 NHLRC4P0CG21 123 aaPredicted RBP4.15□□□□□ -1.75
VPS41-214ENST00000490924 EDN2P20800 178 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 RPL28P46779 137 aaKnown RBP4.15□□□□□ -1.75
VPS41-214ENST00000490924 HIST2H2BDQ6DRA6 164 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 Q8N9P0 234 aaPredicted RBP4.15□□□□□ -1.75
VPS41-214ENST00000490924 MUC7Q8TAX7 377 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 DYNLRB2Q8TF09 96 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 CITED2Q99967 270 aaPredicted RBP4.15□□□□□ -1.75
VPS41-214ENST00000490924 CDC42SE2Q9NRR3 84 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 AKAP9Q99996 3911 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 CELSR1Q9NYQ6 3014 aa4.15□□□□□ -1.75
VPS41-214ENST00000490924 PRRC2AP48634 2157 aaKnown RBP4.14□□□□□ -1.75
VPS41-214ENST00000490924 SETD2Q9BYW2 2564 aaPredicted RBP4.14□□□□□ -1.75
VPS41-214ENST00000490924 KNCNA6PVL3 124 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 IBA57-AS1B1ANH7 110 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 TGFAP01135 160 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 IGKV3-20P01619 116 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 IGHV4-31P0DP07 118 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 MEIG1Q5JSS6 88 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 C11orf44Q8N8P7 122 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 C16orf74Q96GX8 76 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 TMEM126AQ9H061 195 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 Q9H8V8 135 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 PDZD2O15018 2839 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 CENPEQ02224 2701 aa4.14□□□□□ -1.75
VPS41-214ENST00000490924 IGHV3-64A0A075B6Q5 118 aa4.13□□□□□ -1.75
VPS41-214ENST00000490924 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.13□□□□□ -1.75
VPS41-214ENST00000490924 IGKV2-29A2NJV5 120 aaPredicted RBP4.13□□□□□ -1.75
VPS41-214ENST00000490924 IGKV2-30P06310 120 aa4.13□□□□□ -1.75
VPS41-214ENST00000490924 ODF3L2Q3SX64 289 aa4.13□□□□□ -1.75
VPS41-214ENST00000490924 C10orf99Q6UWK7 81 aa4.13□□□□□ -1.75
VPS41-214ENST00000490924 STHQ8IWL8 128 aa4.13□□□□□ -1.75
VPS41-214ENST00000490924 OBSCN-AS1Q96MR7 158 aa4.13□□□□□ -1.75
VPS41-214ENST00000490924 TMEM243Q9BU79 118 aa4.13□□□□□ -1.75
VPS41-214ENST00000490924 H7C2G1 150 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 CRPP02741 224 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 LINC00694P0DN24 101 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 CFAP161Q6P656 301 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 CEMP1Q6PRD7 247 aaPredicted RBP4.12□□□□□ -1.75
VPS41-214ENST00000490924 C1orf158Q8N1D5 194 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.12□□□□□ -1.75
VPS41-214ENST00000490924 POLQO75417 2590 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 CSPG4Q6UVK1 2322 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 CSMD2Q7Z408 3487 aa4.12□□□□□ -1.75
VPS41-214ENST00000490924 CRYBG3Q68DQ2 2970 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 A0A087WZ39 114 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 A0A1B0GUV1 79 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 H3BQ85 93 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 CRLF1O75462 422 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 LY6G6DO95868 133 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 PROK1P58294 105 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 DEFB113Q30KQ7 82 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 NTM-AS1Q6ZSK4 140 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 C5orf38Q86SI9 138 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 CLEC2BQ92478 149 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 KRTAP1-5Q9BYS1 174 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms