RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 KNTC1P50748 2209 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TRBV25-1A0A075B6N4 114 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TRAV9-1A0A075B6T8 112 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TMSB15BA0A087X1C1 80 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 IGLV3-32A0A0A0MS00 114 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TRAV13-2A0A0B4J235 113 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TRAV22A0A0B4J277 110 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TRBV7-4A0A0J9YYF1 115 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 MYMXA0A1B0GTQ4 84 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 CLPSL1A2RUU4 121 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 ZNF736B4DX44 427 aaPredicted RBP0.57□□□□□ -2.32
SMC4-220ENST00000488017 UBE2L6O14933 153 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 PIN1P1O15428 100 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 NDUFB3O43676 98 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 NPYP01303 97 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 CLPSP04118 112 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 PRM2P04554 102 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 LYNX1P0DP58 116 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 KRTAP10-4P60372 401 aaPredicted RBP0.57□□□□□ -2.32
SMC4-220ENST00000488017 ROMO1P60602 79 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 BLCAPP62952 87 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 UBE2BP63146 152 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 ERHP84090 104 aaKnown RBP0.57□□□□□ -2.32
SMC4-220ENST00000488017 SSBP1Q04837 148 aaKnown RBP0.57□□□□□ -2.32
SMC4-220ENST00000488017 ESRGQ1W209 222 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TMEM170BQ5T4T1 132 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 ATP11AUNQ6ZP68 121 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 Q6ZTI0 123 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 LINC00643Q86TS7 51 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 CLECL1Q8IZS7 167 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 Q8N814 137 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 NPCDR1Q9BY65 106 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 TTTY13Q9BZ97 58 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 NHP2Q9NX24 153 aaKnown RBP0.57□□□□□ -2.32
SMC4-220ENST00000488017 PLAC8Q9NZF1 115 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 UBE2D4Q9Y2X8 147 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 V9GYV3 84 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 DMDP11532 3685 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 AKAP9Q99996 3911 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 BSNQ9UPA5 3926 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 PCNTO95613 3336 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 SZT2Q5T011 3432 aa0.57□□□□□ -2.32
SMC4-220ENST00000488017 A0A0C4DFX4 3053 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 UNC13CQ8NB66 2214 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 A0A087WVE0 104 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 TRAV1-2A0A0B4J238 106 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 TRBV10-2A0A0K0K1G8 114 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 SMIM27A0A1W2PRY6 76 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 F8WEM9 126 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 C19orf84I3L1E1 186 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 LEPROTO15243 131 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 ANGP03950 147 aaKnown RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 HMGN2P05204 90 aaKnown RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 PIRTP0C851 137 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 MIFP14174 115 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 COX6B1P14854 86 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 RPL28P46779 137 aaKnown RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 ATP5EP56381 51 aaPredicted RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 PCBD1P61457 104 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 RPL30P62888 115 aaKnown RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 DYNLT1P63172 113 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 ASB16-AS1Q495Z4 193 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 S100A7L2Q5SY68 101 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 Q6JHZ5 121 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 SMIM5Q71RC9 77 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 BAGE3Q86Y29 109 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 BAGE2Q86Y30 109 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 C20orf197Q8N268 126 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 LINC00269Q8N2A0 174 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 FAM216BQ8N7L0 139 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 DAND5Q8N907 189 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 PFN4Q8NHR9 129 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 CLEC2BQ92478 149 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 CHCHD1Q96BP2 118 aaKnown RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 SMIM7Q9BQ49 75 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 PSENENQ9NZ42 101 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 ABRACLQ9P1F3 81 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 NDUFA12Q9UI09 145 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 FAM215AQ9Y5M1 114 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 ARL2-SNX15V9GYD0 113 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 ZFHX2Q9C0A1 2572 aaPredicted RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 FN1P02751 2386 aaKnown RBP0.56□□□□□ -2.32
SMC4-220ENST00000488017 MDN1Q9NU22 5596 aa0.56□□□□□ -2.32
SMC4-220ENST00000488017 ABCA4P78363 2273 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 CHD7Q9P2D1 2997 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 GOLGB1Q14789 3259 aaKnown RBP0.55□□□□□ -2.32
SMC4-220ENST00000488017 MGAQ8IWI9 3026 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 CFAP54Q96N23 3096 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TNCP24821 2201 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 MED13LQ71F56 2210 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 SDK1Q7Z5N4 2213 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TRAV7A0A075B6U4 112 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TRAV3A0A0B4J244 114 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 CXorf51AA0A1B0GTR3 108 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 LOC101927531A0A1B0GV80 90 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TMEM30CPA0ZSE6 113 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 LINC01546A6NGU7 62 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 CRYM-AS1A6NIL9 109 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 LINC01549A6NIU2 74 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 HCG22E2RYF7 251 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms