RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 UBE2D3P61077 147 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 UBE2D2P62837 147 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 HERV-K104P63124 156 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 ESRGQ1W209 222 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 LELP1Q5T871 98 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 LINC00173Q6ZV60 143 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 NEXN-AS1Q8NBZ9 246 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 CDIP1Q9H305 208 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 TRBV6-5A0A0K0K1A5 114 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 FAM240AA0A1B0GVK7 77 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 B5MCH6 92 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 ACYP1P07311 99 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 PRSS1P07477 247 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 CKS2P33552 79 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 FXYD2P54710 66 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 RPS28P62857 69 aaKnown RBP5.7□□□□□ -1.5
USP54-212ENST00000480210 AMN1Q8IY45 258 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 SS18L2Q9UHA2 77 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 LINC00588Q9Y4M8 146 aa5.7□□□□□ -1.5
USP54-212ENST00000480210 LOC100131303A0A0U1RQF7 123 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 A0A1B0GX51 115 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 NCR2O95944 276 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 IFI27P40305 119 aaPredicted RBP5.69□□□□□ -1.5
USP54-212ENST00000480210 ODF1Q14990 250 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 OR13C6PQ8NH95 151 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 RNF185Q96GF1 192 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 CHCHD7Q9BUK0 85 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 Q9H8V8 135 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 TP73-AS1Q9UF72 201 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 TENM2Q9NT68 2774 aa5.69□□□□□ -1.5
USP54-212ENST00000480210 XGP55808 180 aa5.68□□□□□ -1.5
USP54-212ENST00000480210 HERVK_113P61574 105 aa5.68□□□□□ -1.5
USP54-212ENST00000480210 MRPL51Q4U2R6 128 aaKnown RBP5.68□□□□□ -1.5
USP54-212ENST00000480210 PCP2Q8IVA1 136 aa5.68□□□□□ -1.5
USP54-212ENST00000480210 C10orf126Q8N4M7 172 aa5.68□□□□□ -1.5
USP54-212ENST00000480210 C20orf78Q9BR46 151 aa5.68□□□□□ -1.5
USP54-212ENST00000480210 A0A087WX48 190 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 TRBV6-8A0A0A6YYG3 113 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 D6R8Y8 96 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 I3L3M4 83 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 VCYO14598 125 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 MT-ATP8P03928 68 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 RPL13AP40429 203 aaKnown RBP5.67□□□□□ -1.5
USP54-212ENST00000480210 PMVKQ15126 192 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 ORMDL2Q53FV1 153 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 ZC2HC1BQ5TFG8 222 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 SMIM20Q8N5G0 67 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 Q8N8P6 123 aa5.67□□□□□ -1.5
USP54-212ENST00000480210 LYSTQ99698 3801 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 A0A096LNJ9 63 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 IGHV3-38A0A0C4DH36 116 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 TRBV27A0A0K0K1C4 114 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 SDHAF1A6NFY7 115 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 PRSS29PA6NIE9 313 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 F8VRH5 84 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 H7C423 109 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 DNAH10OSP0CZ25 163 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 UBE2D1P51668 147 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 POLR2KP53803 58 aaKnown RBP5.66□□□□□ -1.5
USP54-212ENST00000480210 SUMO2P61956 95 aaKnown RBP5.66□□□□□ -1.5
USP54-212ENST00000480210 LINC01556Q5JQF7 62 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 KIR2DL4Q99706 377 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 Q9UF83 564 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 ALMS1Q8TCU4 4167 aa5.66□□□□□ -1.5
USP54-212ENST00000480210 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.65□□□□□ -1.5
USP54-212ENST00000480210 TRAV26-2A0A0B4J265 109 aa5.65□□□□□ -1.5
USP54-212ENST00000480210 J3KT08 172 aa5.65□□□□□ -1.5
USP54-212ENST00000480210 TNFRSF6BO95407 300 aa5.65□□□□□ -1.5
USP54-212ENST00000480210 NRACQ8N912 160 aa5.65□□□□□ -1.5
USP54-212ENST00000480210 RPL39LQ96EH5 51 aaKnown RBP5.65□□□□□ -1.5
USP54-212ENST00000480210 TMEM101Q96IK0 257 aa5.65□□□□□ -1.5
USP54-212ENST00000480210 NAA38Q9BRA0 125 aaKnown RBP5.65□□□□□ -1.5
USP54-212ENST00000480210 VPS13DQ5THJ4 4388 aa5.65□□□□□ -1.51
USP54-212ENST00000480210 TRAV8-4A0A0B4J246 113 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 NBDYA0A0U1RRE5 68 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 COX6CP09669 75 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 PSMB2P49721 201 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 SRSF9Q13242 221 aaKnown RBP eCLIP5.64□□□□□ -1.51
USP54-212ENST00000480210 LAGE3Q14657 143 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 ATXN8Q156A1 80 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 MEIG1Q5JSS6 88 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 TMEM170BQ5T4T1 132 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 TMEM243Q9BU79 118 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 DNAH6Q9C0G6 4158 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 DNAH1Q9P2D7 4330 aa5.64□□□□□ -1.51
USP54-212ENST00000480210 LOC107984156A0A0G2JMH3 177 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 TRBV7-7A0A0K0K1E9 115 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 A0A1B0GUV1 79 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 H3BT86 120 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 UBE2L6O14933 153 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 Q6ZR54 194 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 NTM-AS1Q6ZSK4 140 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 NFE4Q86UQ8 179 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 ARL17AQ8IVW1 177 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 PRO1854Q9UHT4 67 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 SACSQ9NZJ4 4579 aa5.63□□□□□ -1.51
USP54-212ENST00000480210 LOC389332A0A1B0GUA5 103 aa5.62□□□□□ -1.51
USP54-212ENST00000480210 SMKR1H3BMG3 65 aa5.62□□□□□ -1.51
USP54-212ENST00000480210 UQCRQO14949 82 aa5.62□□□□□ -1.51
USP54-212ENST00000480210 SLC25A20O43772 301 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms