RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 C16orf74Q96GX8 76 aa12.89□□□□□ -0.35
CCM2-209ENST00000477605 TLN2Q9Y4G6 2542 aa12.88□□□□□ -0.35
CCM2-209ENST00000477605 F5H768 121 aa12.88□□□□□ -0.35
CCM2-209ENST00000477605 SNCGO76070 127 aa12.88□□□□□ -0.35
CCM2-209ENST00000477605 DAND5Q8N907 189 aa12.88□□□□□ -0.35
CCM2-209ENST00000477605 CLEC2BQ92478 149 aa12.88□□□□□ -0.35
CCM2-209ENST00000477605 TMEM243Q9BU79 118 aa12.88□□□□□ -0.35
CCM2-209ENST00000477605 ZANQ9Y493 2812 aa12.88□□□□□ -0.35
CCM2-209ENST00000477605 FAM240AA0A1B0GVK7 77 aa12.87□□□□□ -0.35
CCM2-209ENST00000477605 Q6Q795 121 aa12.87□□□□□ -0.35
CCM2-209ENST00000477605 TRAV13-1A0A0B4J241 112 aa12.87□□□□□ -0.35
CCM2-209ENST00000477605 GAGE12JA6NER3 117 aa12.87□□□□□ -0.35
CCM2-209ENST00000477605 GAGE4Q13068 117 aa12.87□□□□□ -0.35
CCM2-209ENST00000477605 GAGE5Q13069 117 aa12.87□□□□□ -0.35
CCM2-209ENST00000477605 TRBV6-4A0A1B0GX49 114 aa12.86□□□□□ -0.35
CCM2-209ENST00000477605 LY6G6DO95868 133 aa12.86□□□□□ -0.35
CCM2-209ENST00000477605 PRIMA1Q86XR5 153 aa12.86□□□□□ -0.35
CCM2-209ENST00000477605 NIPBLQ6KC79 2804 aaeCLIP12.86□□□□□ -0.35
CCM2-209ENST00000477605 COX7A2LO14548 114 aa12.85□□□□□ -0.35
CCM2-209ENST00000477605 UBE2L6O14933 153 aa12.85□□□□□ -0.35
CCM2-209ENST00000477605 SHISA2Q6UWI4 295 aa12.85□□□□□ -0.35
CCM2-209ENST00000477605 NOP10Q9NPE3 64 aaKnown RBP12.85□□□□□ -0.35
CCM2-209ENST00000477605 NSD1Q96L73 2696 aaPredicted RBP12.85□□□□□ -0.35
CCM2-209ENST00000477605 OVOL2Q9BRP0 275 aa12.85□□□□□ -0.35
CCM2-209ENST00000477605 A0A1W2PRX2 142 aa12.84□□□□□ -0.35
CCM2-209ENST00000477605 GAGE2BQ13066 116 aa12.84□□□□□ -0.35
CCM2-209ENST00000477605 GAGE2EQ4V326 116 aa12.84□□□□□ -0.35
CCM2-209ENST00000477605 MEIG1Q5JSS6 88 aa12.84□□□□□ -0.35
CCM2-209ENST00000477605 C16orf95Q9H693 158 aa12.84□□□□□ -0.35
CCM2-209ENST00000477605 GAGE2DQ9UEU5 116 aa12.84□□□□□ -0.35
CCM2-209ENST00000477605 GIG44P09565 113 aaPredicted RBP12.84□□□□□ -0.35
CCM2-209ENST00000477605 FN1P02751 2386 aaKnown RBP12.83□□□□□ -0.36
CCM2-209ENST00000477605 NDUFA7O95182 113 aa12.83□□□□□ -0.36
CCM2-209ENST00000477605 HIST2H2BDQ6DRA6 164 aa12.83□□□□□ -0.36
CCM2-209ENST00000477605 PLAC8L1A1L4L8 177 aa12.82□□□□□ -0.36
CCM2-209ENST00000477605 PF4P02776 101 aa12.82□□□□□ -0.36
CCM2-209ENST00000477605 SOSTDC1Q6X4U4 206 aa12.82□□□□□ -0.36
CCM2-209ENST00000477605 ANK3Q12955 4377 aaKnown RBP12.81□□□□□ -0.36
CCM2-209ENST00000477605 TRGV2A0A075B6R0 118 aa12.81□□□□□ -0.36
CCM2-209ENST00000477605 ESM1Q9NQ30 184 aa12.81□□□□□ -0.36
CCM2-209ENST00000477605 HIVEP2P31629 2446 aa12.81□□□□□ -0.36
CCM2-209ENST00000477605 KRTAP1-1Q07627 177 aa12.81□□□□□ -0.36
CCM2-209ENST00000477605 C11orf44Q8N8P7 122 aa12.81□□□□□ -0.36
CCM2-209ENST00000477605 ANAPC13Q9BS18 74 aa12.81□□□□□ -0.36
CCM2-209ENST00000477605 IGLV1-51P01701 117 aa12.8□□□□□ -0.36
CCM2-209ENST00000477605 TRACP01848 142 aa12.8□□□□□ -0.36
CCM2-209ENST00000477605 GAGE7O76087 117 aa12.79□□□□□ -0.36
CCM2-209ENST00000477605 GAGE12FP0CL80 117 aa12.79□□□□□ -0.36
CCM2-209ENST00000477605 GAGE12GP0CL81 117 aa12.79□□□□□ -0.36
CCM2-209ENST00000477605 GAGE12IP0CL82 117 aa12.79□□□□□ -0.36
CCM2-209ENST00000477605 FAM222AQ5U5X8 452 aa12.79□□□□□ -0.36
CCM2-209ENST00000477605 C15orf53Q8NAA6 179 aa12.79□□□□□ -0.36
CCM2-209ENST00000477605 C19orf73Q9NVV2 129 aa12.79□□□□□ -0.36
CCM2-209ENST00000477605 TRAV26-1A0A087WT03 109 aa12.78□□□□□ -0.36
CCM2-209ENST00000477605 TRAV13-2A0A0B4J235 113 aa12.78□□□□□ -0.36
CCM2-209ENST00000477605 ACYP1P07311 99 aa12.78□□□□□ -0.36
CCM2-209ENST00000477605 RNASE1P07998 156 aaKnown RBP12.78□□□□□ -0.36
CCM2-209ENST00000477605 CSNK1G2-AS1Q8NCQ2 148 aa12.78□□□□□ -0.36
CCM2-209ENST00000477605 LINC01006Q8NI28 216 aa12.78□□□□□ -0.36
CCM2-209ENST00000477605 A0A0U1RRA0 63 aa12.77□□□□□ -0.36
CCM2-209ENST00000477605 SONP18583 2426 aaKnown RBP12.77□□□□□ -0.36
CCM2-209ENST00000477605 CRLF1O75462 422 aa12.77□□□□□ -0.37
CCM2-209ENST00000477605 COX7B2Q8TF08 81 aa12.77□□□□□ -0.37
CCM2-209ENST00000477605 TRGV4A0A0C4DH28 118 aa12.76□□□□□ -0.37
CCM2-209ENST00000477605 INAFM1C9JVW0 142 aa12.75□□□□□ -0.37
CCM2-209ENST00000477605 TTC32Q5I0X7 151 aa12.75□□□□□ -0.37
CCM2-209ENST00000477605 MXRA5Q9NR99 2828 aa12.75□□□□□ -0.37
CCM2-209ENST00000477605 TRBV6-8A0A0A6YYG3 113 aa12.74□□□□□ -0.37
CCM2-209ENST00000477605 NDUFV3P56181 108 aaKnown RBP12.74□□□□□ -0.37
CCM2-209ENST00000477605 RPL35AP18077 110 aaKnown RBP12.74□□□□□ -0.37
CCM2-209ENST00000477605 RPL28P46779 137 aaKnown RBP12.74□□□□□ -0.37
CCM2-209ENST00000477605 FHL2Q14192 279 aa12.74□□□□□ -0.37
CCM2-209ENST00000477605 KRTAP21-3Q3LHN1 58 aa12.73□□□□□ -0.37
CCM2-209ENST00000477605 JMJD1CQ15652 2540 aa12.73□□□□□ -0.37
CCM2-209ENST00000477605 LOC100131303A0A0U1RQF7 123 aa12.73□□□□□ -0.37
CCM2-209ENST00000477605 IGHV3OR16-9A0A0B4J2B5 98 aa12.71□□□□□ -0.37
CCM2-209ENST00000477605 GAGE6Q13070 117 aa12.71□□□□□ -0.37
CCM2-209ENST00000477605 CRPP02741 224 aa12.71□□□□□ -0.38
CCM2-209ENST00000477605 NHLRC4P0CG21 123 aaPredicted RBP12.71□□□□□ -0.38
CCM2-209ENST00000477605 A0A087WZ39 114 aa12.7□□□□□ -0.38
CCM2-209ENST00000477605 IBA57-AS1B1ANH7 110 aa12.7□□□□□ -0.38
CCM2-209ENST00000477605 WFDC10AQ9H1F0 79 aa12.7□□□□□ -0.38
CCM2-209ENST00000477605 BAALC-AS2P0C853 105 aa12.69□□□□□ -0.38
CCM2-209ENST00000477605 MIR7-3HGQ8N6C7 128 aa12.69□□□□□ -0.38
CCM2-209ENST00000477605 TRBV7-7A0A0K0K1E9 115 aa12.69□□□□□ -0.38
CCM2-209ENST00000477605 KIR2DL5BQ8NHK3 375 aa12.69□□□□□ -0.38
CCM2-209ENST00000477605 CHCHD5Q9BSY4 110 aa12.69□□□□□ -0.38
CCM2-209ENST00000477605 SND1-IT1Q9HBX3 110 aa12.68□□□□□ -0.38
CCM2-209ENST00000477605 IGLV4-60A0A075B6I1 120 aa12.68□□□□□ -0.38
CCM2-209ENST00000477605 LINC00612Q8N6U2 182 aa12.67□□□□□ -0.38
CCM2-209ENST00000477605 IMUPQ9GZP8 106 aa12.67□□□□□ -0.38
CCM2-209ENST00000477605 LINC00158P58513 81 aa12.66□□□□□ -0.38
CCM2-209ENST00000477605 TOMM7Q9P0U1 55 aa12.66□□□□□ -0.38
CCM2-209ENST00000477605 INAFM2P0DMQ5 153 aa12.66□□□□□ -0.38
CCM2-209ENST00000477605 IGKV2-28A0A075B6P5 120 aa12.65□□□□□ -0.38
CCM2-209ENST00000477605 H0YGX0 51 aa12.65□□□□□ -0.38
CCM2-209ENST00000477605 IGKV2D-28P01615 120 aa12.65□□□□□ -0.38
CCM2-209ENST00000477605 LINC00337Q8N6G1 96 aa12.65□□□□□ -0.38
CCM2-209ENST00000477605 LINC01561Q8N1V8 128 aa12.65□□□□□ -0.39
CCM2-209ENST00000477605 FAM218AQ96MZ4 157 aa12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms