RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FAM24AA6NFZ4 105 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 COX6B1P14854 86 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 GNG11P61952 73 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 FAM223AQ8IWN6 122 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 FAM167A-AS1Q96KT0 104 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 FAIMQ9NVQ4 179 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 TULP4Q9NRJ4 1543 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 AKAP6Q13023 2319 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 POLA1P09884 1462 aaPredicted RBP-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 PKDREJQ9NTG1 2253 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 TOP2BQ02880 1626 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 NRKQ7Z2Y5 1582 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 MUC12Q9UKN1 5478 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 K7EQZ3 153 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 C10orf113Q5VZT2 155 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 DEFB123Q8N688 67 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 ARL2-SNX15V9GYD0 113 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 DSTQ03001 7570 aaKnown RBP-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 PKD1L1Q8TDX9 2849 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 LRP2P98164 4655 aa-0.31□□□□□ -2.46
CCDC88A-212ENST00000474059 DIP2CQ9Y2E4 1556 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 TNXBP22105 4242 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 GAPVD1Q14C86 1478 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 MAGI1Q96QZ7 1491 aaPredicted RBP-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 SPRR1BP22528 89 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 GNG4P50150 75 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 Q0VG73 95 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 IER3IP1Q9Y5U9 82 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 CC2D2AQ9P2K1 1620 aa-0.32□□□□□ -2.46
CCDC88A-212ENST00000474059 NUP188Q5SRE5 1749 aa-0.33□□□□□ -2.46
CCDC88A-212ENST00000474059 CORTO00230 105 aa-0.33□□□□□ -2.46
CCDC88A-212ENST00000474059 UBA52P62987 128 aaKnown RBP-0.33□□□□□ -2.46
CCDC88A-212ENST00000474059 PPP3R1P63098 170 aa-0.33□□□□□ -2.46
CCDC88A-212ENST00000474059 WHAMMP3Q1A5X7 153 aa-0.33□□□□□ -2.46
CCDC88A-212ENST00000474059 SVBPQ8N300 66 aa-0.33□□□□□ -2.46
CCDC88A-212ENST00000474059 MANBALQ9NQG1 85 aa-0.33□□□□□ -2.46
CCDC88A-212ENST00000474059 TRBV7-4A0A0J9YYF1 115 aa-0.34□□□□□ -2.46
CCDC88A-212ENST00000474059 F6UZH7 168 aa-0.34□□□□□ -2.46
CCDC88A-212ENST00000474059 UBE2D3P61077 147 aa-0.34□□□□□ -2.46
CCDC88A-212ENST00000474059 UBE2D2P62837 147 aa-0.34□□□□□ -2.46
CCDC88A-212ENST00000474059 SARNPP82979 210 aaKnown RBP-0.34□□□□□ -2.46
CCDC88A-212ENST00000474059 SPHKAPQ2M3C7 1700 aa-0.34□□□□□ -2.46
CCDC88A-212ENST00000474059 SFTA2Q6UW10 78 aa-0.34□□□□□ -2.46
CCDC88A-212ENST00000474059 ALMS1Q8TCU4 4167 aa-0.35□□□□□ -2.46
CCDC88A-212ENST00000474059 PTPN13Q12923 2485 aa-0.35□□□□□ -2.46
CCDC88A-212ENST00000474059 ADGRL2O95490 1459 aa-0.35□□□□□ -2.46
CCDC88A-212ENST00000474059 PZPP20742 1482 aa-0.35□□□□□ -2.46
CCDC88A-212ENST00000474059 FAT2Q9NYQ8 4349 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 LINC00959A0A1B0GUT2 108 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 S100A1P23297 94 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 LINC01600Q96MT4 127 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 C2orf88Q9BSF0 95 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 ARHGAP5Q13017 1502 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 KIAA0556O60303 1618 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 C1orf167Q5SNV9 1468 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 CHD1O14646 1710 aa-0.35□□□□□ -2.47
CCDC88A-212ENST00000474059 MAPKBP1O60336 1514 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 NAP1L6A6NFF2 107 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 FAM223BA6NKX1 122 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 COX6CP09669 75 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 FDCSPQ8NFU4 85 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 PRO1854Q9UHT4 67 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 CHD6Q8TD26 2715 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 MRC2Q9UBG0 1479 aa-0.36□□□□□ -2.47
CCDC88A-212ENST00000474059 TOPAZ1Q8N9V7 1692 aa-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 XRN1Q8IZH2 1706 aaKnown RBP-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 TRAPPC2P0DI81 140 aa-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 TRAPPC2BP0DI82 140 aa-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 LCN9Q8WX39 176 aa-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 FXYD6Q9H0Q3 95 aa-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 GNG8Q9UK08 70 aa-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 ZFHX3Q15911 3703 aa-0.37□□□□□ -2.47
CCDC88A-212ENST00000474059 A0A1B0GWA3 101 aa-0.38□□□□□ -2.47
CCDC88A-212ENST00000474059 LINC00587B1AMM8 73 aa-0.38□□□□□ -2.47
CCDC88A-212ENST00000474059 TMEM203Q969S6 136 aa-0.38□□□□□ -2.47
CCDC88A-212ENST00000474059 PRO1933Q9H354 126 aa-0.38□□□□□ -2.47
CCDC88A-212ENST00000474059 A0A0G2JMZ2 1700 aa-0.38□□□□□ -2.47
CCDC88A-212ENST00000474059 SETBP1Q9Y6X0 1596 aa-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 CRYM-AS1A6NIL9 109 aa-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 SNCAP37840 140 aa-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 C12orf57Q99622 126 aa-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 PIEZO2Q9H5I5 2752 aa-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 NSD1Q96L73 2696 aaPredicted RBP-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 ABCA3Q99758 1704 aa-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 BSNQ9UPA5 3926 aa-0.39□□□□□ -2.47
CCDC88A-212ENST00000474059 NLRP1Q9C000 1473 aa-0.4□□□□□ -2.47
CCDC88A-212ENST00000474059 HECTD4Q9Y4D8 3996 aa-0.4□□□□□ -2.47
CCDC88A-212ENST00000474059 LOC730098B7Z3J9 87 aa-0.4□□□□□ -2.47
CCDC88A-212ENST00000474059 H3BQ15 152 aa-0.4□□□□□ -2.47
CCDC88A-212ENST00000474059 FAM135AQ9P2D6 1515 aa-0.4□□□□□ -2.47
CCDC88A-212ENST00000474059 COL4A6Q14031 1691 aa-0.4□□□□□ -2.47
CCDC88A-212ENST00000474059 FMN2Q9NZ56 1722 aa-0.41□□□□□ -2.47
CCDC88A-212ENST00000474059 SPINK4O60575 86 aa-0.41□□□□□ -2.48
CCDC88A-212ENST00000474059 SAA2P0DJI9 122 aaPredicted RBP-0.41□□□□□ -2.48
CCDC88A-212ENST00000474059 SPRR2BP35325 72 aa-0.41□□□□□ -2.48
CCDC88A-212ENST00000474059 MRPS10P82664 201 aaKnown RBP-0.41□□□□□ -2.48
CCDC88A-212ENST00000474059 KLK9Q2XQG4 91 aa-0.41□□□□□ -2.48
CCDC88A-212ENST00000474059 PLEKHH2Q8IVE3 1493 aa-0.41□□□□□ -2.48
CCDC88A-212ENST00000474059 SPTBN1Q01082 2364 aaKnown RBP-0.42□□□□□ -2.48
CCDC88A-212ENST00000474059 SYS1-DBNDD2H3BUS1 97 aa-0.42□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 307.9 ms