RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 Q8NA96 180 aa9.92□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 MIFP14174 115 aa9.91□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 FAM19A3Q7Z5A8 133 aa9.91□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 RPL28P46779 137 aaKnown RBP9.91□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 IGLV1-47P01700 117 aa9.91□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 NDUFC1O43677 76 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 CCDC140Q96MF4 163 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 C22orf34Q6ZV56 151 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 SMR3AQ99954 134 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 C6orf99Q4VX62 202 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 Q6YL49 198 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 ZNF80P51504 273 aaPredicted RBP9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 IGHV6-1A0A0B4J1U7 121 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 A0A0J9YXY3 114 aa9.9□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 ATP5EP56381 51 aaPredicted RBP9.89□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 CHD8Q9HCK8 2581 aa9.89□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 TRBV6-8A0A0A6YYG3 113 aa9.89□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 PLA2G5P39877 138 aa9.89□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 A0A1W2PNU3 283 aaPredicted RBP9.89□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 SMIM9A6NGZ8 99 aa9.89□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 TNFRSF13BO14836 293 aaPredicted RBP9.89□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 CFAP126Q5VTH2 177 aa9.88□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 C18orf65Q6ZTR6 163 aa9.88□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 C7orf65Q6ZTY9 151 aa9.88□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 C20orf173Q96LM9 149 aa9.88□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 LOC107984640A0A0U1RRK4 108 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 FHL2Q14192 279 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 LMO4P61968 165 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 Q6ZSV7 163 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 NEXN-AS1Q8NBZ9 246 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 IGLC6P0CF74 106 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 C1orf195Q5TG92 126 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 MSMPQ1L6U9 139 aa9.87□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 PRORYQ9H606 182 aa9.86□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 A8MZ25 164 aa9.86□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 VPREB1P12018 145 aa9.86□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 DHRS4-AS1Q9P1J3 65 aa9.86□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 Q6ZQY7 126 aa9.85□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 LST1O00453 97 aa9.85□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 ANKRD11Q6UB99 2663 aaPredicted RBP9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 TRBV6-5A0A0K0K1A5 114 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 LINC01556Q5JQF7 62 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 hDV103S1A0JD37 113 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 J3QL48 77 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 IGKV2D-30A0A075B6S6 120 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 IGKV2-30P06310 120 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 SBSPONQ8IVN8 264 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 LINC00643Q86TS7 51 aa9.84□□□□□ -0.83
NPHP3-ACAD11-201ENST00000471702 USP9YO00507 2555 aaPredicted RBP9.83□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 ANKRD17O75179 2603 aaKnown RBP9.83□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 Q6ZSR3 168 aa9.82□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 K7EQG2 157 aa9.82□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 COX6B2Q6YFQ2 88 aa9.82□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 C1orf137Q5JT78 98 aa9.81□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 HIGD1BQ9P298 99 aa9.81□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 A0A1B0GXF2 115 aa9.81□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 IGLV4-3A0A075B6K6 122 aa9.81□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 RBX1P62877 108 aa9.81□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 SPAG11AQ6PDA7 123 aa9.81□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 C2orf48Q96LS8 159 aa9.8□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 IGLV4-69A0A075B6H9 119 aa9.8□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 PCOTHQ58A44 107 aa9.8□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 IMUPQ9GZP8 106 aa9.8□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 LINC00308Q8TCZ7 52 aa9.8□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 BRI3O95415 125 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 CPAMD8Q8IZJ3 1885 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 XGP55808 180 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 LINC00208Q96KT6 92 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 CELA1Q9UNI1 258 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 C19orf71A6NCJ1 209 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 IBA57-AS1B1ANH7 110 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 UQCRQO14949 82 aa9.79□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 BEAN1Q3B7T3 259 aa9.78□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 M0QXV9 152 aa9.78□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 LINC01006Q8NI28 216 aa9.78□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 TRIAP1O43715 76 aa9.78□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 FAM229AH3BQW9 127 aa9.78□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 CRYGAP11844 174 aa9.78□□□□□ -0.84
NPHP3-ACAD11-201ENST00000471702 COA6Q5JTJ3 125 aaKnown RBP9.77□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 LIMD2Q9BT23 127 aa9.77□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 TP73-AS1Q9UF72 201 aa9.77□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 LINC01547P58512 204 aaPredicted RBP9.77□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 FBXL19-AS1Q494R0 122 aa9.77□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 Q6ZS46 218 aa9.77□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 LRRC75A-AS1Q8N1F1 130 aa9.77□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 COL4A3Q01955 1670 aa9.76□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 H7C423 109 aa9.75□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 TRBV30A0A0K0K1B3 111 aa9.75□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 KRTAP27-1Q3LI81 207 aa9.75□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 M0QY20 66 aa9.75□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 PRRC2CQ9Y520 2896 aaKnown RBP9.75□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 PSPHP1O15172 72 aa9.75□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 CD164L2Q6UWJ8 174 aa9.75□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 M0R378 163 aa9.74□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 ZNF22P17026 224 aaPredicted RBP9.74□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 ATP5EP2Q5VTU8 51 aa9.74□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 EBI3Q14213 229 aa9.74□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 TRBV6-4A0A1B0GX49 114 aa9.74□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 RNASE3P12724 160 aaKnown RBP9.74□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 LELP1Q5T871 98 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms