RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 ABCC1P33527 1531 aa1.76□□□□□ -2.13
PTCD3-205ENST00000464541 CCDC88BA6NC98 1476 aa1.76□□□□□ -2.13
PTCD3-205ENST00000464541 AFDNP55196 1824 aaKnown RBP1.76□□□□□ -2.13
PTCD3-205ENST00000464541 M0R3E3 92 aa1.76□□□□□ -2.13
PTCD3-205ENST00000464541 CFDP00746 253 aaPredicted RBP1.76□□□□□ -2.13
PTCD3-205ENST00000464541 Q96NJ1 140 aa1.76□□□□□ -2.13
PTCD3-205ENST00000464541 PRR15LQ9BU68 103 aa1.76□□□□□ -2.13
PTCD3-205ENST00000464541 MYO3AQ8NEV4 1616 aa1.76□□□□□ -2.13
PTCD3-205ENST00000464541 NRXN1Q9ULB1 1477 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 DOCK11Q5JSL3 2073 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 C18orf32Q8TCD1 76 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 LINC00846Q9NV44 126 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 PSENENQ9NZ42 101 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 PHRF1Q9P1Y6 1649 aaKnown RBP1.75□□□□□ -2.13
PTCD3-205ENST00000464541 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.75□□□□□ -2.13
PTCD3-205ENST00000464541 NCOA2Q15596 1464 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 TENM1Q9UKZ4 2725 aa1.75□□□□□ -2.13
PTCD3-205ENST00000464541 MYMXA0A1B0GTQ4 84 aa1.74□□□□□ -2.13
PTCD3-205ENST00000464541 SMIM13P0DJ93 91 aa1.74□□□□□ -2.13
PTCD3-205ENST00000464541 ZNF137PP52743 207 aa1.74□□□□□ -2.13
PTCD3-205ENST00000464541 PLGLAQ15195 96 aa1.74□□□□□ -2.13
PTCD3-205ENST00000464541 SMIM11BQ8TCY0 68 aa1.74□□□□□ -2.13
PTCD3-205ENST00000464541 COL4A6Q14031 1691 aa1.74□□□□□ -2.13
PTCD3-205ENST00000464541 ARFGEF1Q9Y6D6 1849 aa1.73□□□□□ -2.13
PTCD3-205ENST00000464541 CEBPZOSA8MTT3 80 aa1.73□□□□□ -2.13
PTCD3-205ENST00000464541 IQCF6A8MYZ5 107 aa1.73□□□□□ -2.13
PTCD3-205ENST00000464541 DLG5Q8TDM6 1919 aa1.73□□□□□ -2.13
PTCD3-205ENST00000464541 DNMBPQ6XZF7 1577 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 LRRC9Q6ZRR7 1453 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 C10orf142B7Z368 130 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 FXYD6P3P58550 94 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 Q6ZSA8 131 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 TMEM263Q8WUH6 116 aaKnown RBP1.72□□□□□ -2.13
PTCD3-205ENST00000464541 SDK1Q7Z5N4 2213 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 CLIP1P30622 1438 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 DIP2BQ9P265 1576 aa1.72□□□□□ -2.13
PTCD3-205ENST00000464541 HELZ2Q9BYK8 2649 aaKnown RBP1.71□□□□□ -2.13
PTCD3-205ENST00000464541 A0A096LNT2 108 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 UMAD1C9J7I0 102 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 PIN1P1O15428 100 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 GCHFRP30047 84 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 PLAC4Q8WY50 150 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 SPRR4Q96PI1 79 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 CDK13Q14004 1512 aaKnown RBP1.71□□□□□ -2.14
PTCD3-205ENST00000464541 NEXMIFQ5QGS0 1516 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 KIF21AQ7Z4S6 1674 aa1.71□□□□□ -2.14
PTCD3-205ENST00000464541 PTPN23Q9H3S7 1636 aa1.7□□□□□ -2.14
PTCD3-205ENST00000464541 A0A087WVE0 104 aa1.7□□□□□ -2.14
PTCD3-205ENST00000464541 Q6ZRX8 168 aa1.7□□□□□ -2.14
PTCD3-205ENST00000464541 CFAP74Q9C0B2 1584 aa1.7□□□□□ -2.14
PTCD3-205ENST00000464541 KMT2BQ9UMN6 2715 aaPredicted RBP1.7□□□□□ -2.14
PTCD3-205ENST00000464541 KIF20BQ96Q89 1820 aa1.7□□□□□ -2.14
PTCD3-205ENST00000464541 CUX1P39880 1505 aa1.7□□□□□ -2.14
PTCD3-205ENST00000464541 ASCC3Q8N3C0 2202 aaKnown RBP1.7□□□□□ -2.14
PTCD3-205ENST00000464541 LOC285556D6RIA3 1793 aa1.7□□□□□ -2.14
PTCD3-205ENST00000464541 SIPA1L3O60292 1781 aaPredicted RBP1.7□□□□□ -2.14
PTCD3-205ENST00000464541 PDCD11Q14690 1871 aaKnown RBP1.69□□□□□ -2.14
PTCD3-205ENST00000464541 ARHGEF5Q12774 1597 aa1.69□□□□□ -2.14
PTCD3-205ENST00000464541 SPINT3P49223 89 aa1.69□□□□□ -2.14
PTCD3-205ENST00000464541 GNGT1P63211 74 aa1.69□□□□□ -2.14
PTCD3-205ENST00000464541 E9PCH4 1651 aa1.69□□□□□ -2.14
PTCD3-205ENST00000464541 ZMYM4Q5VZL5 1548 aa1.69□□□□□ -2.14
PTCD3-205ENST00000464541 RP1L1Q8IWN7 2480 aaPredicted RBP1.68□□□□□ -2.14
PTCD3-205ENST00000464541 H0Y9P7 68 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 S100A3P33764 101 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 ATP5EP2Q5VTU8 51 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 HEPN1Q6WQI6 88 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 FDCSPQ8NFU4 85 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 S100ZQ8WXG8 99 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 RAPGEF6Q8TEU7 1601 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 BTAF1O14981 1849 aa1.68□□□□□ -2.14
PTCD3-205ENST00000464541 DUOX2Q9NRD8 1548 aa1.67□□□□□ -2.14
PTCD3-205ENST00000464541 UGGT2Q9NYU1 1516 aa1.67□□□□□ -2.14
PTCD3-205ENST00000464541 GVQW2A0A096LPI5 108 aaPredicted RBP1.67□□□□□ -2.14
PTCD3-205ENST00000464541 RPL37P61927 97 aaKnown RBP1.67□□□□□ -2.14
PTCD3-205ENST00000464541 Q5BKY6 102 aa1.67□□□□□ -2.14
PTCD3-205ENST00000464541 DEFB121Q5J5C9 76 aa1.67□□□□□ -2.14
PTCD3-205ENST00000464541 C6orf201Q7Z4U5 140 aa1.67□□□□□ -2.14
PTCD3-205ENST00000464541 A0A1B0GUT8 65 aa1.66□□□□□ -2.14
PTCD3-205ENST00000464541 Q6JHZ5 121 aa1.66□□□□□ -2.14
PTCD3-205ENST00000464541 DEFB107AQ8IZN7 70 aa1.66□□□□□ -2.14
PTCD3-205ENST00000464541 LINC00472Q9H8W2 130 aa1.66□□□□□ -2.14
PTCD3-205ENST00000464541 UBE2D4Q9Y2X8 147 aa1.66□□□□□ -2.14
PTCD3-205ENST00000464541 CACNA1BQ00975 2339 aa1.66□□□□□ -2.14
PTCD3-205ENST00000464541 IFT172Q9UG01 1749 aa1.66□□□□□ -2.14
PTCD3-205ENST00000464541 COL4A1P02462 1669 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 A0A087WXM4 84 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 TRBV6-1A0A0K0K1D8 114 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 LY6G6CO95867 125 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 ANGP03950 147 aaKnown RBP1.65□□□□□ -2.15
PTCD3-205ENST00000464541 HAMPP81172 84 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 C10orf113Q5VZT2 155 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 PROK2Q9HC23 129 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 MYH4Q9Y623 1939 aa1.65□□□□□ -2.15
PTCD3-205ENST00000464541 MED13LQ71F56 2210 aa1.64□□□□□ -2.15
PTCD3-205ENST00000464541 ABCA8O94911 1581 aa1.64□□□□□ -2.15
PTCD3-205ENST00000464541 LRRC37A2A6NM11 1700 aa1.64□□□□□ -2.15
PTCD3-205ENST00000464541 SPATA8Q6RVD6 105 aa1.64□□□□□ -2.15
PTCD3-205ENST00000464541 NCOA6Q14686 2063 aaPredicted RBP1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms