RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	TIMM17B	O60830	172 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	IGKV3-20	P01619	116 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	RPL35A	P18077	110 aa	Known RBP	6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	TIRAP	P58753	221 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	IGHV1-58	A0A0C4DH39	117 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	TCL1B	O95988	128 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	GAGE2A	Q6NT46	116 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	PEMT	Q9UBM1	199 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	NPC2	P61916	151 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	TRAV8-4	A0A0B4J246	113 aa		6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	FAM74A4	Q5TZK3	123 aa		6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	CEMP1	Q6PRD7	247 aa	Predicted RBP	6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	LINC00612	Q8N6U2	182 aa		6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	NTN5	Q8WTR8	489 aa	Predicted RBP	6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	HIST2H2BD	Q6DRA6	164 aa		6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	BRK1	Q8WUW1	75 aa		6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	DUX3	Q96PT4	197 aa		6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	IGHV3OR16-12	A0A075B7B8	117 aa		6.22	□□□□□ -1.41
SYNE1-215	ENST00000460912	DAZ2	Q13117	558 aa	Known RBP	6.21	□□□□□ -1.41
SYNE1-215	ENST00000460912	OVOL2	Q9BRP0	275 aa		6.21	□□□□□ -1.41
SYNE1-215	ENST00000460912	RETN	Q9HD89	108 aa		6.21	□□□□□ -1.41
SYNE1-215	ENST00000460912	PRKDC	P78527	4128 aa	Known RBP	6.21	□□□□□ -1.42
SYNE1-215	ENST00000460912	IGHV3-64	A0A075B6Q5	118 aa		6.21	□□□□□ -1.42
SYNE1-215	ENST00000460912	COX6A2	Q02221	97 aa		6.21	□□□□□ -1.42
SYNE1-215	ENST00000460912	PKD1L1	Q8TDX9	2849 aa		6.21	□□□□□ -1.42
SYNE1-215	ENST00000460912	SPATA3	Q8NHX4	192 aa		6.21	□□□□□ -1.42
SYNE1-215	ENST00000460912	PRB2	P02812	416 aa	Predicted RBP	6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	ZNF625	Q96I27	306 aa	Predicted RBP	6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	TRBV30	A0A0K0K1B3	111 aa		6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	MUSTN1	Q8IVN3	82 aa		6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	DSCR8	Q96T75	97 aa		6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912		F5H697	171 aa		6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	NDUFA1	O15239	70 aa		6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	IGLV1-51	P01701	117 aa		6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	PRO1854	Q9UHT4	67 aa		6.2	□□□□□ -1.42
SYNE1-215	ENST00000460912	INS	P01308	110 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	KRTAP24-1	Q3LI83	254 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	LINC00242	Q5T6M2	205 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	MIA	Q16674	131 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	C4orf26	Q17RF5	130 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	PPDPFL	Q8WWR9	84 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	TRAV8-3	A0A0A6YYJ7	113 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912		A0A0U1RRA0	63 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	DEFB121	Q5J5C9	76 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	C22orf24	Q9Y442	160 aa		6.19	□□□□□ -1.42
SYNE1-215	ENST00000460912	TRBV10-1	A0A0K0K1A3	114 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	SEC61G	P60059	68 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	HERVK_113	P63121	156 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	TMEM170B	Q5T4T1	132 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	TMEM101	Q96IK0	257 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	TEP1	Q99973	2627 aa	Known RBP	6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	IGHV3-73	A0A0B4J1V6	119 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	TRAV13-1	A0A0B4J241	112 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912		A0A1W2PRX2	142 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	ANKRD29	Q8N6D5	301 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	LINC00482	Q8N8I6	264 aa		6.18	□□□□□ -1.42
SYNE1-215	ENST00000460912	SMIM1	B2RUZ4	78 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	JMJD1C	Q15652	2540 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	MAST4	O15021	2626 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	hADV29S1	A0JD25	119 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	IGKV2-29	A2NJV5	120 aa	Predicted RBP	6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912		A8MZ25	164 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912		J3KT08	172 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	CDC42SE2	Q9NRR3	84 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	CCL24	O00175	119 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	WFDC9	Q8NEX5	89 aa		6.17	□□□□□ -1.42
SYNE1-215	ENST00000460912	ACAN	P16112	2415 aa		6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912	FAM236D	A0A1B0GTK5	79 aa		6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912	FAM236C	P0DP71	79 aa		6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912	SOSTDC1	Q6X4U4	206 aa		6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912	TEN1	Q86WV5	123 aa		6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912	CDKN2A-AS1	Q9UH64	79 aa		6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912		V9GYY9	64 aa		6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912	LGALS3	P17931	250 aa	Known RBP	6.16	□□□□□ -1.42
SYNE1-215	ENST00000460912	TRIAP1	O43715	76 aa		6.15	□□□□□ -1.42
SYNE1-215	ENST00000460912	HIST1H4A	P62805	103 aa	Known RBP	6.15	□□□□□ -1.42
SYNE1-215	ENST00000460912		K7EQD1	137 aa		6.15	□□□□□ -1.42
SYNE1-215	ENST00000460912		H7C423	109 aa		6.15	□□□□□ -1.43
SYNE1-215	ENST00000460912	SDIM1	Q6ZPB5	146 aa		6.15	□□□□□ -1.43
SYNE1-215	ENST00000460912		Q6ZTI0	123 aa		6.15	□□□□□ -1.43
SYNE1-215	ENST00000460912	DAZ4	Q86SG3	579 aa	Known RBP	6.15	□□□□□ -1.43
SYNE1-215	ENST00000460912	DAZ3	Q9NR90	486 aa	Known RBP	6.15	□□□□□ -1.43
SYNE1-215	ENST00000460912	CSMD3	Q7Z407	3707 aa		6.15	□□□□□ -1.43
SYNE1-215	ENST00000460912	LYST	Q99698	3801 aa		6.14	□□□□□ -1.43
SYNE1-215	ENST00000460912	DNAH6	Q9C0G6	4158 aa		6.14	□□□□□ -1.43
SYNE1-215	ENST00000460912	KRTAP21-3	Q3LHN1	58 aa		6.14	□□□□□ -1.43
SYNE1-215	ENST00000460912	RNASE13	Q5GAN3	156 aa	Known RBP	6.14	□□□□□ -1.43
SYNE1-215	ENST00000460912	TEX49	A0A1B0GTD5	131 aa		6.14	□□□□□ -1.43
SYNE1-215	ENST00000460912	SLC25A20	O43772	301 aa		6.14	□□□□□ -1.43
SYNE1-215	ENST00000460912	C2orf82	Q6UX34	121 aa		6.13	□□□□□ -1.43
SYNE1-215	ENST00000460912	LINC01587	Q99440	93 aa		6.13	□□□□□ -1.43
SYNE1-215	ENST00000460912	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	6.13	□□□□□ -1.43
SYNE1-215	ENST00000460912	TRBV6-4	A0A1B0GX49	114 aa		6.13	□□□□□ -1.43
SYNE1-215	ENST00000460912	FHL2	Q14192	279 aa		6.13	□□□□□ -1.43
SYNE1-215	ENST00000460912	NDUFA12	Q9UI09	145 aa		6.13	□□□□□ -1.43
SYNE1-215	ENST00000460912	MTOR	P42345	2549 aa		6.13	□□□□□ -1.43
SYNE1-215	ENST00000460912	XCL2	Q9UBD3	114 aa		6.12	□□□□□ -1.43
SYNE1-215	ENST00000460912	COL7A1	Q02388	2944 aa		6.12	□□□□□ -1.43

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