RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ZNF561-AS1K7EIQ3 104 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 NKAPP1Q8N9T2 125 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 IGLV1-40P01703 118 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 XCL2Q9UBD3 114 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 AVPP01185 164 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 POLR2KP53803 58 aaKnown RBP4.6□□□□□ -1.67
VPS13D-202ENST00000460333 PIK3CD-AS1Q5SR53 167 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 IBA57-AS1B1ANH7 110 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 MPLKIPQ8TAP9 179 aa4.6□□□□□ -1.67
VPS13D-202ENST00000460333 SORL1Q92673 2214 aa4.59□□□□□ -1.67
VPS13D-202ENST00000460333 IGIPA6NJ69 53 aa4.59□□□□□ -1.67
VPS13D-202ENST00000460333 F8W735 103 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-202ENST00000460333 FN1P02751 2386 aaKnown RBP4.59□□□□□ -1.67
VPS13D-202ENST00000460333 HIGD2BQ4VC39 106 aa4.59□□□□□ -1.67
VPS13D-202ENST00000460333 M0QY20 66 aa4.59□□□□□ -1.68
VPS13D-202ENST00000460333 KRTAP10-9P60411 292 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 DIRC1Q969H9 104 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 IGLV2-18A0A075B6J9 118 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 HILS1P60008 231 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 IGLV4-69A0A075B6H9 119 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 C5orf38Q86SI9 138 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 ZFAND2AQ8N6M9 145 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 CCKP06307 115 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 SMCPP49901 116 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-202ENST00000460333 CDKN2A-AS1Q9UH64 79 aa4.58□□□□□ -1.68
VPS13D-202ENST00000460333 NCR3O14931 201 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 BCE1O60756 84 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 XCL1P47992 114 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 UNQ9165/PRO28630Q6UXU0 137 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 LOC107984640A0A0U1RRK4 108 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 TSHBP01222 138 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 C4orf3Q8WVX3 66 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 C16orf74Q96GX8 76 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 SPEGQ15772 3267 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 BPY2O14599 106 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 ZNF702PQ9H963 129 aa4.57□□□□□ -1.68
VPS13D-202ENST00000460333 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.56□□□□□ -1.68
VPS13D-202ENST00000460333 NDUFB1O75438 58 aa4.56□□□□□ -1.68
VPS13D-202ENST00000460333 DEFB130BP0DP73 79 aa4.56□□□□□ -1.68
VPS13D-202ENST00000460333 DEFB130AP0DP74 79 aa4.56□□□□□ -1.68
VPS13D-202ENST00000460333 MIFP14174 115 aa4.56□□□□□ -1.68
VPS13D-202ENST00000460333 TRBV10-3A0A0K0K1G6 114 aa4.56□□□□□ -1.68
VPS13D-202ENST00000460333 GAS8-AS1O95177 125 aa4.56□□□□□ -1.68
VPS13D-202ENST00000460333 COX7BP24311 80 aa4.56□□□□□ -1.68
VPS13D-202ENST00000460333 RPL28P46779 137 aaKnown RBP4.56□□□□□ -1.68
VPS13D-202ENST00000460333 ANGP03950 147 aaKnown RBP4.55□□□□□ -1.68
VPS13D-202ENST00000460333 C11orf21Q9P2W6 132 aa4.55□□□□□ -1.68
VPS13D-202ENST00000460333 DMXL1Q9Y485 3027 aa4.55□□□□□ -1.68
VPS13D-202ENST00000460333 CEMP1Q6PRD7 247 aaPredicted RBP4.55□□□□□ -1.68
VPS13D-202ENST00000460333 FAM19A3Q7Z5A8 133 aa4.55□□□□□ -1.68
VPS13D-202ENST00000460333 LINC00467Q9BRT7 94 aa4.55□□□□□ -1.68
VPS13D-202ENST00000460333 CFHR3Q02985 330 aa4.55□□□□□ -1.68
VPS13D-202ENST00000460333 RNASE3P12724 160 aaKnown RBP4.55□□□□□ -1.68
VPS13D-202ENST00000460333 RMI2Q96E14 147 aa4.55□□□□□ -1.68
VPS13D-202ENST00000460333 FSHBP01225 129 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 UBE2BP63146 152 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 NOP10Q9NPE3 64 aaKnown RBP4.54□□□□□ -1.68
VPS13D-202ENST00000460333 HECTD1Q9ULT8 2610 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 A0A096LNT2 108 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 TSPEAR-AS2P59090 65 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 SEC61GP60059 68 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 SNURFQ9Y675 71 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 MUC7Q8TAX7 377 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 C9orf85Q96MD7 179 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 SMR3AQ99954 134 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 SLURP1P55000 103 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 UBE2D4Q9Y2X8 147 aa4.54□□□□□ -1.68
VPS13D-202ENST00000460333 DEFB136Q30KP8 78 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 SPTSSBQ8NFR3 76 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 SMIM11BQ8TCY0 68 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 MYO15AQ9UKN7 3530 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 UBE2AP49459 152 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 CCL18P55774 89 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 Q6ZSV7 163 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 KLLNB2CW77 178 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 Q8N2B8 174 aa4.53□□□□□ -1.68
VPS13D-202ENST00000460333 K7EQG2 157 aa4.53□□□□□ -1.69
VPS13D-202ENST00000460333 SLPIP03973 132 aa4.53□□□□□ -1.69
VPS13D-202ENST00000460333 ETDCA0A1B0GVM5 59 aa4.52□□□□□ -1.69
VPS13D-202ENST00000460333 SPART-AS1P0CW21 52 aa4.52□□□□□ -1.69
VPS13D-202ENST00000460333 SETD2Q9BYW2 2564 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-202ENST00000460333 POM121L12Q8N7R1 296 aa4.52□□□□□ -1.69
VPS13D-202ENST00000460333 FREM2Q5SZK8 3169 aa4.52□□□□□ -1.69
VPS13D-202ENST00000460333 AMELXQ99217 191 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 MUC3AQ02505 3323 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 C10orf99Q6UWK7 81 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 CRYGDP07320 174 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 PRR9Q5T870 116 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 CLPSL2Q6UWE3 100 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 DEFB105AQ8NG35 78 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 ACANP16112 2415 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 SPAG11BQ08648 103 aa4.51□□□□□ -1.69
VPS13D-202ENST00000460333 A0A087WVE0 104 aa4.5□□□□□ -1.69
VPS13D-202ENST00000460333 PRYO14603 147 aa4.5□□□□□ -1.69
VPS13D-202ENST00000460333 DEFB1P60022 68 aa4.5□□□□□ -1.69
VPS13D-202ENST00000460333 LINC01006Q8NI28 216 aa4.5□□□□□ -1.69
VPS13D-202ENST00000460333 CAMK2N2Q96S95 79 aa4.5□□□□□ -1.69
VPS13D-202ENST00000460333 GYPEP15421 78 aa4.5□□□□□ -1.69
VPS13D-202ENST00000460333 CFAP54Q96N23 3096 aa4.5□□□□□ -1.69
VPS13D-202ENST00000460333 COX17Q14061 63 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms