RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RBMY1FQ15415 496 aaKnown RBP5.31□□□□□ -1.56
SYNE1-213ENST00000448038 KLK9Q2XQG4 91 aa5.31□□□□□ -1.56
SYNE1-213ENST00000448038 CITED1Q99966 193 aa5.31□□□□□ -1.56
SYNE1-213ENST00000448038 MAPKAPK5-AS1Q8N8E1 139 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 IGIPA6NJ69 53 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 LECT2O14960 151 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 UBE2AP49459 152 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 UBE2D1P51668 147 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 NTN5Q8WTR8 489 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-213ENST00000448038 URB1-AS1Q96HZ7 61 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 IBA57-AS1B1ANH7 110 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 Q6ZSN1 163 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 DIRC1Q969H9 104 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 SPANXCQ9NY87 97 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 TP73-AS1Q9UF72 201 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 CFAP46Q8IYW2 2715 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 SYCNQ0VAF6 134 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 LINC00526Q96FQ7 95 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 CENPEQ02224 2701 aa5.3□□□□□ -1.56
SYNE1-213ENST00000448038 LINC00310P59036 64 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 LY6G6CO95867 125 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 PTH2Q96A98 100 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 AKAP13Q12802 2813 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 NUPR2A6NF83 97 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 CHCHD7Q9BUK0 85 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 UBL5Q9BZL1 73 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 XAGE1AQ9HD64 81 aa5.29□□□□□ -1.56
SYNE1-213ENST00000448038 TAX1BP3O14907 124 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 KRTAP1-3Q8IUG1 177 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 FAM19A4Q96LR4 140 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 C11orf72Q8NBR9 251 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 PCP4P48539 62 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 FLNAP21333 2647 aaKnown RBP5.28□□□□□ -1.56
SYNE1-213ENST00000448038 LINC00694P0DN24 101 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 HAMPP81172 84 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 LINC01620Q4KN68 170 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 ANKRD29Q8N6D5 301 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 LINC00308Q8TCZ7 52 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 CLEC2BQ92478 149 aa5.28□□□□□ -1.56
SYNE1-213ENST00000448038 CFAP54Q96N23 3096 aa5.27□□□□□ -1.57
SYNE1-213ENST00000448038 USP24Q9UPU5 2620 aa5.27□□□□□ -1.57
SYNE1-213ENST00000448038 IGLV4-60A0A075B6I1 120 aa5.27□□□□□ -1.57
SYNE1-213ENST00000448038 LINC00242Q5T6M2 205 aa5.27□□□□□ -1.57
SYNE1-213ENST00000448038 ITPR3Q14573 2671 aa5.27□□□□□ -1.57
SYNE1-213ENST00000448038 SPANXB1Q9NS25 103 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-213ENST00000448038 A0A0B4J2C4 111 aa5.27□□□□□ -1.57
SYNE1-213ENST00000448038 KIF25-AS1Q9Y6Z4 181 aa5.26□□□□□ -1.57
SYNE1-213ENST00000448038 COX7BP24311 80 aa5.26□□□□□ -1.57
SYNE1-213ENST00000448038 CELA1Q9UNI1 258 aa5.26□□□□□ -1.57
SYNE1-213ENST00000448038 DSPP15924 2871 aaKnown RBP5.25□□□□□ -1.57
SYNE1-213ENST00000448038 ANAPC13Q9BS18 74 aa5.25□□□□□ -1.57
SYNE1-213ENST00000448038 IGLV4-69A0A075B6H9 119 aa5.25□□□□□ -1.57
SYNE1-213ENST00000448038 SPANXDQ9BXN6 97 aa5.25□□□□□ -1.57
SYNE1-213ENST00000448038 TNRC18O15417 2968 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-213ENST00000448038 FAM19A5Q7Z5A7 132 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-213ENST00000448038 VPS13AQ96RL7 3174 aa5.25□□□□□ -1.57
SYNE1-213ENST00000448038 NHLRC4P0CG21 123 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-213ENST00000448038 CSDC2Q9Y534 153 aaKnown RBP5.24□□□□□ -1.57
SYNE1-213ENST00000448038 TIMM17BO60830 172 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 FUSP35637 526 aaKnown RBP eCLIP5.24□□□□□ -1.57
SYNE1-213ENST00000448038 LYPD5Q6UWN5 251 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 Q8IZM0 81 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 A0A096LNJ9 63 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 H3BQ85 93 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 HIGD2AQ9BW72 106 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 COL6A3P12111 3177 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 A0A087WZ39 114 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 COX6A2Q02221 97 aa5.24□□□□□ -1.57
SYNE1-213ENST00000448038 WFDC2Q14508 124 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 CYSRT1A8MQ03 144 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 WFDC10BQ8IUB3 73 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 WFDC9Q8NEX5 89 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 KRTAP1-1Q07627 177 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 AMELXQ99217 191 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 B9D2Q9BPU9 175 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 TRBV10-2A0A0K0K1G8 114 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 POM121L12Q8N7R1 296 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 X6R8D5 127 aa5.23□□□□□ -1.57
SYNE1-213ENST00000448038 SMIM1B2RUZ4 78 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 LINC00315P59091 139 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 LAMA1P25391 3075 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 A0A1B0GUV1 79 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 C2orf91Q6ZV80 131 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 SBSPONQ8IVN8 264 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 hADV29S1A0JD25 119 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 TCL1BO95988 128 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 MUC4Q99102 2169 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 TMEM256-PLSCR3K7ERE1 68 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 FAM19A1Q7Z5A9 133 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 TEN1Q86WV5 123 aa5.22□□□□□ -1.57
SYNE1-213ENST00000448038 H3BT86 120 aa5.21□□□□□ -1.57
SYNE1-213ENST00000448038 UNQ6190/PRO20217Q6UXQ8 127 aa5.21□□□□□ -1.57
SYNE1-213ENST00000448038 LOC107984640A0A0U1RRK4 108 aa5.21□□□□□ -1.58
SYNE1-213ENST00000448038 JMJD7-PLA2G4BH0Y9G9 81 aa5.21□□□□□ -1.58
SYNE1-213ENST00000448038 COX17Q14061 63 aa5.21□□□□□ -1.58
SYNE1-213ENST00000448038 C6orf99Q4VX62 202 aa5.21□□□□□ -1.58
SYNE1-213ENST00000448038 TRACP01848 142 aa5.2□□□□□ -1.58
SYNE1-213ENST00000448038 RBM3P98179 157 aaKnown RBP5.2□□□□□ -1.58
SYNE1-213ENST00000448038 IGKV2-28A0A075B6P5 120 aa5.2□□□□□ -1.58
SYNE1-213ENST00000448038 IGKV2D-28P01615 120 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms