RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 LST1O00453 97 aa8.58□□□□□ -1.04
MSH6-204ENST00000445503 DAZ2Q13117 558 aaKnown RBP8.57□□□□□ -1.04
MSH6-204ENST00000445503 DAZ4Q86SG3 579 aaKnown RBP8.57□□□□□ -1.04
MSH6-204ENST00000445503 DAZ3Q9NR90 486 aaKnown RBP8.57□□□□□ -1.04
MSH6-204ENST00000445503 DEFB113Q30KQ7 82 aa8.57□□□□□ -1.04
MSH6-204ENST00000445503 RNF152Q8N8N0 203 aa8.57□□□□□ -1.04
MSH6-204ENST00000445503 FAM236AA0A1B0GUQ0 79 aa8.56□□□□□ -1.04
MSH6-204ENST00000445503 FAM236BA0A1B0GV22 79 aa8.56□□□□□ -1.04
MSH6-204ENST00000445503 CCDC179H3BU77 68 aa8.56□□□□□ -1.04
MSH6-204ENST00000445503 TIRAPP58753 221 aa8.56□□□□□ -1.04
MSH6-204ENST00000445503 ODF3L2Q3SX64 289 aa8.56□□□□□ -1.04
MSH6-204ENST00000445503 ATP5G1P05496 136 aa8.56□□□□□ -1.04
MSH6-204ENST00000445503 ESM1Q9NQ30 184 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 J3KT08 172 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 COX7A2LO14548 114 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 PLA2G2AP14555 144 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 SEC61GP60059 68 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 COX7B2Q8TF08 81 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 CRYBG3Q68DQ2 2970 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 BRK1Q8WUW1 75 aa8.55□□□□□ -1.04
MSH6-204ENST00000445503 TRAV13-2A0A0B4J235 113 aa8.54□□□□□ -1.04
MSH6-204ENST00000445503 SBSPONQ8IVN8 264 aa8.54□□□□□ -1.04
MSH6-204ENST00000445503 C1orf158Q8N1D5 194 aa8.54□□□□□ -1.04
MSH6-204ENST00000445503 CHD6Q8TD26 2715 aa8.54□□□□□ -1.04
MSH6-204ENST00000445503 HIST2H2BCQ6DN03 193 aa8.54□□□□□ -1.04
MSH6-204ENST00000445503 TMEM86BQ8N661 226 aa8.54□□□□□ -1.04
MSH6-204ENST00000445503 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.54□□□□□ -1.04
MSH6-204ENST00000445503 LITAFQ99732 161 aa8.54□□□□□ -1.04
MSH6-204ENST00000445503 SMIM1B2RUZ4 78 aa8.53□□□□□ -1.04
MSH6-204ENST00000445503 MALP21145 153 aa8.53□□□□□ -1.04
MSH6-204ENST00000445503 C11orf72Q8NBR9 251 aa8.53□□□□□ -1.04
MSH6-204ENST00000445503 TRBV10-1A0A0K0K1A3 114 aa8.52□□□□□ -1.04
MSH6-204ENST00000445503 DNAJC9-AS1A6NH13 148 aa8.52□□□□□ -1.04
MSH6-204ENST00000445503 IGLV10-54A0A075B6I4 117 aa8.52□□□□□ -1.05
MSH6-204ENST00000445503 Q8N2B8 174 aa8.52□□□□□ -1.05
MSH6-204ENST00000445503 INAFM2P0DMQ5 153 aa8.52□□□□□ -1.05
MSH6-204ENST00000445503 HIST1H4AP62805 103 aaKnown RBP8.52□□□□□ -1.05
MSH6-204ENST00000445503 WFDC11Q8NEX6 87 aa8.52□□□□□ -1.05
MSH6-204ENST00000445503 IGKV3D-7A0A0C4DH55 119 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 LECT2O14960 151 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 TIMM17BO60830 172 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 TEX15Q9BXT5 2789 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 CDC42SE2Q9NRR3 84 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 DEFB4AO15263 64 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 CFAP46Q8IYW2 2715 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 SLPIP03973 132 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 SS18Q15532 418 aa8.51□□□□□ -1.05
MSH6-204ENST00000445503 GYPEP15421 78 aa8.5□□□□□ -1.05
MSH6-204ENST00000445503 C16orf74Q96GX8 76 aa8.5□□□□□ -1.05
MSH6-204ENST00000445503 C14orf132Q9NPU4 83 aa8.5□□□□□ -1.05
MSH6-204ENST00000445503 SMIM9A6NGZ8 99 aa8.5□□□□□ -1.05
MSH6-204ENST00000445503 UTP20O75691 2785 aaKnown RBP8.49□□□□□ -1.05
MSH6-204ENST00000445503 NTM-AS1Q6ZSK4 140 aa8.49□□□□□ -1.05
MSH6-204ENST00000445503 TRAV25A0A0B4J276 109 aa8.49□□□□□ -1.05
MSH6-204ENST00000445503 CMC4P56277 68 aaPredicted RBP8.49□□□□□ -1.05
MSH6-204ENST00000445503 BEAN1Q3B7T3 259 aa8.49□□□□□ -1.05
MSH6-204ENST00000445503 SOSTDC1Q6X4U4 206 aa8.49□□□□□ -1.05
MSH6-204ENST00000445503 FAM110AQ9BQ89 295 aa8.49□□□□□ -1.05
MSH6-204ENST00000445503 FLNAP21333 2647 aaKnown RBP8.48□□□□□ -1.05
MSH6-204ENST00000445503 IGSF10Q6WRI0 2623 aa8.48□□□□□ -1.05
MSH6-204ENST00000445503 PPDPFQ9H3Y8 114 aa8.48□□□□□ -1.05
MSH6-204ENST00000445503 BSNQ9UPA5 3926 aa8.48□□□□□ -1.05
MSH6-204ENST00000445503 FASNP49327 2511 aaKnown RBP8.48□□□□□ -1.05
MSH6-204ENST00000445503 TRACP01848 142 aa8.47□□□□□ -1.05
MSH6-204ENST00000445503 ACYP1P07311 99 aa8.47□□□□□ -1.05
MSH6-204ENST00000445503 IGLV4-60A0A075B6I1 120 aa8.47□□□□□ -1.05
MSH6-204ENST00000445503 ANGP03950 147 aaKnown RBP8.47□□□□□ -1.05
MSH6-204ENST00000445503 HRCT1Q6UXD1 115 aa8.47□□□□□ -1.05
MSH6-204ENST00000445503 MRPL55Q7Z7F7 128 aaKnown RBP8.47□□□□□ -1.05
MSH6-204ENST00000445503 TMEM126AQ9H061 195 aa8.46□□□□□ -1.06
MSH6-204ENST00000445503 FAM104AQ969W3 186 aa8.45□□□□□ -1.06
MSH6-204ENST00000445503 OVOL2Q9BRP0 275 aa8.45□□□□□ -1.06
MSH6-204ENST00000445503 TRBV6-8A0A0A6YYG3 113 aa8.45□□□□□ -1.06
MSH6-204ENST00000445503 SDIM1Q6ZPB5 146 aa8.45□□□□□ -1.06
MSH6-204ENST00000445503 LINC00643Q86TS7 51 aa8.45□□□□□ -1.06
MSH6-204ENST00000445503 SMIM11BQ8TCY0 68 aa8.45□□□□□ -1.06
MSH6-204ENST00000445503 C1orf195Q5TG92 126 aa8.44□□□□□ -1.06
MSH6-204ENST00000445503 NCR3O14931 201 aa8.44□□□□□ -1.06
MSH6-204ENST00000445503 CUBNO60494 3623 aa8.44□□□□□ -1.06
MSH6-204ENST00000445503 IGLV5-39A0A0G2JS06 123 aa8.43□□□□□ -1.06
MSH6-204ENST00000445503 CCL18P55774 89 aa8.43□□□□□ -1.06
MSH6-204ENST00000445503 LAMTOR3Q9UHA4 124 aa8.43□□□□□ -1.06
MSH6-204ENST00000445503 FAM218AQ96MZ4 157 aa8.43□□□□□ -1.06
MSH6-204ENST00000445503 ITPR3Q14573 2671 aa8.42□□□□□ -1.06
MSH6-204ENST00000445503 H0YGX0 51 aa8.42□□□□□ -1.06
MSH6-204ENST00000445503 LINC00337Q8N6G1 96 aa8.42□□□□□ -1.06
MSH6-204ENST00000445503 LINC01006Q8NI28 216 aa8.42□□□□□ -1.06
MSH6-204ENST00000445503 A0A087WYN8 130 aa8.42□□□□□ -1.06
MSH6-204ENST00000445503 PRR3P79522 188 aaKnown RBP8.42□□□□□ -1.06
MSH6-204ENST00000445503 TRBV6-4A0A1B0GX49 114 aa8.41□□□□□ -1.06
MSH6-204ENST00000445503 ORMDL1Q9P0S3 153 aa8.41□□□□□ -1.06
MSH6-204ENST00000445503 NDUFC2O95298 119 aa8.41□□□□□ -1.06
MSH6-204ENST00000445503 BBC3Q96PG8 261 aaPredicted RBP8.41□□□□□ -1.06
MSH6-204ENST00000445503 FBN2P35556 2912 aa8.41□□□□□ -1.06
MSH6-204ENST00000445503 NBEAL2Q6ZNJ1 2754 aa8.41□□□□□ -1.06
MSH6-204ENST00000445503 IGLV5-45A0A087WSX0 123 aa8.41□□□□□ -1.06
MSH6-204ENST00000445503 NHLRC4P0CG21 123 aaPredicted RBP8.41□□□□□ -1.06
MSH6-204ENST00000445503 Q6Q795 121 aa8.4□□□□□ -1.06
MSH6-204ENST00000445503 LINC00269Q8N2A0 174 aa8.4□□□□□ -1.06
MSH6-204ENST00000445503 LINC00526Q96FQ7 95 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms