RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 SFTA2Q6UW10 78 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 ALKAL2Q6UX46 152 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 NDUFA11Q86Y39 141 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 PATE1Q8WXA2 126 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 TECTAO75443 2155 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 IGKV1D-17A0A075B6S4 117 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 IGLV3-19P01714 112 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 KRTAP10-7P60409 375 aaPredicted RBP1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 CNBPP62633 177 aaKnown RBP1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 DEFA5Q01523 94 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 SERP2Q8N6R1 65 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 TTTY12Q9BZ98 90 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 SNURFQ9Y675 71 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 FLG2Q5D862 2391 aaPredicted RBP1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 SRCAPQ6ZRS2 3230 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 SMIM31A0A1B0GVY4 71 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 EDDM3BP56851 147 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 SPRNQ5BIV9 151 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 KRTAP5-1Q6L8H4 278 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 TSLPQ969D9 159 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 LINC00474Q9P2X8 69 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 C22orf24Q9Y442 160 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 SPCS1Q9Y6A9 102 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 COL27A1Q8IZC6 1860 aaPredicted RBP1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 IGLV3-32A0A0A0MS00 114 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 NUPR2A6NF83 97 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 CHKB-CPT1BH3BT56 60 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 IGFL1Q6UW32 110 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 ZNF818PQ6ZRF7 136 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 COA5Q86WW8 74 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 PPP1R1CQ8WVI7 109 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 CYYR1Q96J86 154 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 TRGV9Q99603 122 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 MYLKQ15746 1914 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 MCM3APO60318 1980 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 A0A1W2PNU3 283 aaPredicted RBP1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 HIGD1CA8MV81 97 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 LCE1EQ5T753 118 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 FAM74A4Q5TZK3 123 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 C20orf78Q9BR46 151 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 UNC13CQ8NB66 2214 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 A0A0G2JND7 137 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 NMBP08949 121 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 P0C880 135 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 SSBP1Q04837 148 aaKnown RBP1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 C10orf55Q5SWW7 151 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 CACFD1Q9UGQ2 172 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 PRO1854Q9UHT4 67 aa1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 CHD3Q12873 2000 aaKnown RBP1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 MACF1Q9UPN3 7388 aaKnown RBP1.3□□□□□ -2.2
CCDC88A-208ENST00000444458 CXorf51AA0A1B0GTR3 108 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 FREM1Q5H8C1 2179 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 DOCK2Q92608 1830 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 TRBV7-1A0A0A6YYK4 115 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 KANTRA0A1W2PQU2 76 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 NUPR1O60356 82 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 IGKV1-17P01599 117 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 KRTAP1-4P0C5Y4 121 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 SMCO4Q9NRQ5 59 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 MED9Q9NWA0 146 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 UTP20O75691 2785 aaKnown RBP1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 LAMA4Q16363 1823 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 RGPD2P0DJD1 1756 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 BAZ2BQ9UIF8 2168 aaKnown RBP1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 NUMA1Q14980 2115 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 MPDZO75970 2070 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 TEX49A0A1B0GTD5 131 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 COX6CP09669 75 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 C20orf197Q8N268 126 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 CCDC88CQ9P219 2028 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 PSME4Q14997 1843 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 PLIN4Q96Q06 1357 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 CFAP46Q8IYW2 2715 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 TRBV7-3A0A075B6L6 115 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 TRBV6-5A0A0K0K1A5 114 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 TRBV7-7A0A0K0K1E9 115 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 PMCHL1Q16048 86 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 SPATA45Q537H7 98 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 TMEM170BQ5T4T1 132 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 ST20Q9HBF5 79 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 DYNLRB1Q9NP97 96 aa1.29□□□□□ -2.2
CCDC88A-208ENST00000444458 TPRXLQ17RH7 258 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 LINC00304Q8N9R0 145 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 KRTAP4-4Q9BYR3 166 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 PLCE1Q9P212 2302 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 PRRC2AP48634 2157 aaKnown RBP1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 COL6A6A6NMZ7 2263 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 SYS1-DBNDD2H3BUS1 97 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 PPP1R17O96001 155 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 KRTAP13-2Q52LG2 175 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 KRTAP26-1Q6PEX3 210 aa1.28□□□□□ -2.2
CCDC88A-208ENST00000444458 A0A0J9YY99 117 aa1.28□□□□□ -2.21
CCDC88A-208ENST00000444458 LCE6AA0A183 80 aa1.28□□□□□ -2.21
CCDC88A-208ENST00000444458 FXYD1O00168 92 aa1.28□□□□□ -2.21
CCDC88A-208ENST00000444458 Q8N6K4 173 aa1.28□□□□□ -2.21
CCDC88A-208ENST00000444458 NBEAL2Q6ZNJ1 2754 aa1.28□□□□□ -2.21
CCDC88A-208ENST00000444458 DOCK10Q96BY6 2186 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 TRGV2A0A075B6R0 118 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 IGLC7A0M8Q6 106 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 SPAG11BQ08648 103 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms