RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 MYCBP2O75592 4640 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 I3L3M4 83 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 S100A9P06702 114 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 GPX2P18283 190 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 S100A1P23297 94 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 PLP1P60201 277 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 NCKAP5O14513 1909 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 IGKV2D-30A0A075B6S6 120 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 LOC100131303A0A0U1RQF7 123 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 IGKV2-30P06310 120 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 MPZP25189 248 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 TRGV9Q99603 122 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 RAI1Q7Z5J4 1906 aaPredicted RBP1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 FAM240BA0A1B0GVZ2 78 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 ORMDL2Q53FV1 153 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 SFTA2Q6UW10 78 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 FAM24BQ8N5W8 94 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 KRTAP9-8Q9BYQ0 159 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 KRTAP4-9Q9BYQ8 210 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 PSMB2P49721 201 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 PTTG1IPP53801 180 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 CTAG1AP78358 180 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 LCA10Q71F78 164 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 CLEC2BQ92478 149 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 DUSP21Q9H596 190 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 INMT-MINDY4F8WBC2 141 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 BCL2L11O43521 198 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 CXorf1O96002 111 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 TRACP01848 142 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 HBDP02042 147 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 COX6CP09669 75 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 SPHARQ15513 63 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 LINC01590Q5TEZ4 76 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 MAP1LC3AQ9H492 121 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 IGLV5-39A0A0G2JS06 123 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 K7ERS5 55 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 BCE1O60756 84 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 GASTP01350 101 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 CD164L2Q6UWJ8 174 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 MGLLQ99685 303 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 VSIRQ9H7M9 311 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 FAT3Q8TDW7 4589 aa1.73□□□□□ -2.13
CCDC88A-205ENST00000426576 A0A1B0GVY2 172 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 SNAPINO95295 136 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 GIPP09681 153 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 MIC13Q5XKP0 118 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 GGACTQ9BVM4 153 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 OTORQ9NRC9 128 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 A0A087X0M5 115 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 A0A1B0GX30 115 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 KANTRA0A1W2PQU2 76 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 GNRH2O43555 120 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 SPTSSBQ8NFR3 76 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 GFRA4Q9GZZ7 299 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 SAR1AQ9NR31 198 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 ANAPC11Q9NYG5 84 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 ANAPC1Q9H1A4 1944 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 TRAV13-2A0A0B4J235 113 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 TRBV6-1A0A0K0K1D8 114 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 HERVK_113P63121 156 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 PDE6HQ13956 83 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 PEA15Q15121 130 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 NDUFA5Q16718 116 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 C21orf62-AS1Q17RA5 79 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 PRR15Q8IV56 129 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 OR10AG1Q8NH19 301 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 GPHA2Q96T91 129 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 CR1P17927 2039 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 SDHAF1A6NFY7 115 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 RNASE2P10153 161 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 MRPS10P82664 201 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 IFITM2Q01629 132 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 GDF5OSQ5U4N7 250 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 KCNRGQ8N5I3 272 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 SFT2D1Q8WV19 159 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 MBD3L1Q8WWY6 194 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 OBSCN-AS1Q96MR7 158 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 FAM30AQ9NZY2 134 aa1.72□□□□□ -2.13
CCDC88A-205ENST00000426576 A8MWP4 228 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 HMGN3Q15651 99 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 CSAG1Q6PB30 78 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 V9GYS6 101 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 ZANQ9Y493 2812 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 PKD1P98161 4303 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 A0A0J9YXY3 114 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 F8WDY8 70 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 CDC42EP2O14613 210 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 SERF2P84101 59 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 IL15RAQ13261 267 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 FOXL2NBQ6ZUU3 175 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 EXOC3-AS1Q8N2X6 119 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 LENEPQ9Y5L5 61 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 NOTOA8MTQ0 251 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 RPL12P30050 165 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 MLLT11Q13015 90 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 PDZD11Q5EBL8 140 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 OR5C1Q8NGR4 320 aa1.71□□□□□ -2.14
CCDC88A-205ENST00000426576 PKHD1L1Q86WI1 4243 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 LEPROTO15243 131 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms