RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 CITED1Q99966 193 aa11.22□□□□□ -0.61
CDH1-202ENST00000422392 TRAV25A0A0B4J276 109 aa11.22□□□□□ -0.61
CDH1-202ENST00000422392 IGKV3OR2-268A0A0C4DH90 116 aa11.22□□□□□ -0.61
CDH1-202ENST00000422392 DAZ2Q13117 558 aaKnown RBP11.22□□□□□ -0.61
CDH1-202ENST00000422392 DAZ4Q86SG3 579 aaKnown RBP11.22□□□□□ -0.61
CDH1-202ENST00000422392 TEX29Q8N6K0 151 aa11.22□□□□□ -0.61
CDH1-202ENST00000422392 DAZ3Q9NR90 486 aaKnown RBP11.22□□□□□ -0.61
CDH1-202ENST00000422392 TRBV10-1A0A0K0K1A3 114 aa11.21□□□□□ -0.61
CDH1-202ENST00000422392 F5H768 121 aa11.21□□□□□ -0.61
CDH1-202ENST00000422392 LINC01600Q96MT4 127 aa11.21□□□□□ -0.62
CDH1-202ENST00000422392 PDZD2O15018 2839 aa11.2□□□□□ -0.62
CDH1-202ENST00000422392 TRGV2A0A075B6R0 118 aa11.2□□□□□ -0.62
CDH1-202ENST00000422392 SNCGO76070 127 aa11.2□□□□□ -0.62
CDH1-202ENST00000422392 PLAC8L1A1L4L8 177 aa11.2□□□□□ -0.62
CDH1-202ENST00000422392 UBE2L6O14933 153 aa11.2□□□□□ -0.62
CDH1-202ENST00000422392 CSDC2Q9Y534 153 aaKnown RBP11.2□□□□□ -0.62
CDH1-202ENST00000422392 ANK3Q12955 4377 aaKnown RBP11.19□□□□□ -0.62
CDH1-202ENST00000422392 H3BT86 120 aa11.19□□□□□ -0.62
CDH1-202ENST00000422392 TMEM86BQ8N661 226 aa11.19□□□□□ -0.62
CDH1-202ENST00000422392 ANAPC13Q9BS18 74 aa11.19□□□□□ -0.62
CDH1-202ENST00000422392 FAM19A3Q7Z5A8 133 aa11.18□□□□□ -0.62
CDH1-202ENST00000422392 C15orf53Q8NAA6 179 aa11.18□□□□□ -0.62
CDH1-202ENST00000422392 TMEM243Q9BU79 118 aa11.18□□□□□ -0.62
CDH1-202ENST00000422392 TTC32Q5I0X7 151 aa11.17□□□□□ -0.62
CDH1-202ENST00000422392 VWFP04275 2813 aa11.17□□□□□ -0.62
CDH1-202ENST00000422392 GAGE2BQ13066 116 aa11.17□□□□□ -0.62
CDH1-202ENST00000422392 GAGE6Q13070 117 aa11.17□□□□□ -0.62
CDH1-202ENST00000422392 GAGE2EQ4V326 116 aa11.17□□□□□ -0.62
CDH1-202ENST00000422392 GAGE2DQ9UEU5 116 aa11.17□□□□□ -0.62
CDH1-202ENST00000422392 LINC01006Q8NI28 216 aa11.16□□□□□ -0.62
CDH1-202ENST00000422392 TOMM7Q9P0U1 55 aa11.16□□□□□ -0.62
CDH1-202ENST00000422392 IGLV4-60A0A075B6I1 120 aa11.15□□□□□ -0.63
CDH1-202ENST00000422392 TRGV4A0A0C4DH28 118 aa11.14□□□□□ -0.63
CDH1-202ENST00000422392 COX7A2LO14548 114 aa11.14□□□□□ -0.63
CDH1-202ENST00000422392 C16orf74Q96GX8 76 aa11.14□□□□□ -0.63
CDH1-202ENST00000422392 NHLRC4P0CG21 123 aaPredicted RBP11.14□□□□□ -0.63
CDH1-202ENST00000422392 SHISA2Q6UWI4 295 aa11.14□□□□□ -0.63
CDH1-202ENST00000422392 C19orf73Q9NVV2 129 aa11.13□□□□□ -0.63
CDH1-202ENST00000422392 FAM218AQ96MZ4 157 aa11.13□□□□□ -0.63
CDH1-202ENST00000422392 CSNK1G2-AS1Q8NCQ2 148 aa11.12□□□□□ -0.63
CDH1-202ENST00000422392 MIR7-3HGQ8N6C7 128 aa11.11□□□□□ -0.63
CDH1-202ENST00000422392 NDUFV3P56181 108 aaKnown RBP11.11□□□□□ -0.63
CDH1-202ENST00000422392 IGLV1-51P01701 117 aa11.1□□□□□ -0.63
CDH1-202ENST00000422392 HERV-K104P63124 156 aa11.1□□□□□ -0.63
CDH1-202ENST00000422392 COX7B2Q8TF08 81 aa11.1□□□□□ -0.63
CDH1-202ENST00000422392 CHCHD5Q9BSY4 110 aa11.1□□□□□ -0.63
CDH1-202ENST00000422392 TRBV6-4A0A1B0GX49 114 aa11.1□□□□□ -0.63
CDH1-202ENST00000422392 FHL2Q14192 279 aa11.09□□□□□ -0.63
CDH1-202ENST00000422392 COPS9Q8WXC6 57 aa11.09□□□□□ -0.63
CDH1-202ENST00000422392 DEFB121Q5J5C9 76 aa11.09□□□□□ -0.63
CDH1-202ENST00000422392 LINC00337Q8N6G1 96 aa11.09□□□□□ -0.63
CDH1-202ENST00000422392 DEFB130BP0DP73 79 aa11.08□□□□□ -0.64
CDH1-202ENST00000422392 DEFB130AP0DP74 79 aa11.08□□□□□ -0.64
CDH1-202ENST00000422392 KRTAP1-1Q07627 177 aa11.08□□□□□ -0.64
CDH1-202ENST00000422392 C5orf38Q86SI9 138 aa11.08□□□□□ -0.64
CDH1-202ENST00000422392 Q9HAA7 133 aa11.08□□□□□ -0.64
CDH1-202ENST00000422392 TRBV6-8A0A0A6YYG3 113 aa11.08□□□□□ -0.64
CDH1-202ENST00000422392 C11orf68Q9H3H3 251 aaKnown RBP11.08□□□□□ -0.64
CDH1-202ENST00000422392 IGKV2-28A0A075B6P5 120 aa11.07□□□□□ -0.64
CDH1-202ENST00000422392 IGKV2D-28P01615 120 aa11.07□□□□□ -0.64
CDH1-202ENST00000422392 OVOL2Q9BRP0 275 aa11.07□□□□□ -0.64
CDH1-202ENST00000422392 LINC00158P58513 81 aa11.07□□□□□ -0.64
CDH1-202ENST00000422392 SND1-IT1Q9HBX3 110 aa11.06□□□□□ -0.64
CDH1-202ENST00000422392 IGHV3OR16-9A0A0B4J2B5 98 aa11.06□□□□□ -0.64
CDH1-202ENST00000422392 BAALC-AS2P0C853 105 aa11.06□□□□□ -0.64
CDH1-202ENST00000422392 PFN2P35080 140 aa11.06□□□□□ -0.64
CDH1-202ENST00000422392 C22orf24Q9Y442 160 aa11.06□□□□□ -0.64
CDH1-202ENST00000422392 FAM240AA0A1B0GVK7 77 aa11.05□□□□□ -0.64
CDH1-202ENST00000422392 B5MCH6 92 aa11.05□□□□□ -0.64
CDH1-202ENST00000422392 CRPP02741 224 aa11.05□□□□□ -0.64
CDH1-202ENST00000422392 HELZ2Q9BYK8 2649 aaKnown RBP11.04□□□□□ -0.64
CDH1-202ENST00000422392 CCDC179H3BU77 68 aa11.04□□□□□ -0.64
CDH1-202ENST00000422392 HIVEP2P31629 2446 aa11.04□□□□□ -0.64
CDH1-202ENST00000422392 A0A096LPF7 62 aa11.04□□□□□ -0.64
CDH1-202ENST00000422392 RNASE1P07998 156 aaKnown RBP11.04□□□□□ -0.64
CDH1-202ENST00000422392 Q6Q795 121 aa11.04□□□□□ -0.64
CDH1-202ENST00000422392 TRACP01848 142 aa11.03□□□□□ -0.64
CDH1-202ENST00000422392 CMC4P56277 68 aaPredicted RBP11.03□□□□□ -0.64
CDH1-202ENST00000422392 CLPSL2Q6UWE3 100 aa11.03□□□□□ -0.64
CDH1-202ENST00000422392 CCL18P55774 89 aa11.03□□□□□ -0.64
CDH1-202ENST00000422392 SMCR5Q8TEV8 140 aa11.03□□□□□ -0.64
CDH1-202ENST00000422392 SS18L2Q9UHA2 77 aa11.03□□□□□ -0.64
CDH1-202ENST00000422392 FASNP49327 2511 aaKnown RBP11.02□□□□□ -0.65
CDH1-202ENST00000422392 TRAV13-2A0A0B4J235 113 aa11.02□□□□□ -0.65
CDH1-202ENST00000422392 C16orf95Q9H693 158 aa11.02□□□□□ -0.65
CDH1-202ENST00000422392 SMIM11BQ8TCY0 68 aa11.01□□□□□ -0.65
CDH1-202ENST00000422392 UNC79Q9P2D8 2635 aa11.01□□□□□ -0.65
CDH1-202ENST00000422392 A0A087WYN8 130 aa11.01□□□□□ -0.65
CDH1-202ENST00000422392 RPL28P46779 137 aaKnown RBP11.01□□□□□ -0.65
CDH1-202ENST00000422392 XCL1P47992 114 aa11.01□□□□□ -0.65
CDH1-202ENST00000422392 FAM110AQ9BQ89 295 aa11.01□□□□□ -0.65
CDH1-202ENST00000422392 A0A087WZ39 114 aa11□□□□□ -0.65
CDH1-202ENST00000422392 LINC00959A0A1B0GUT2 108 aa11□□□□□ -0.65
CDH1-202ENST00000422392 GYPEP15421 78 aa11□□□□□ -0.65
CDH1-202ENST00000422392 TENM1Q9UKZ4 2725 aa11□□□□□ -0.65
CDH1-202ENST00000422392 ATP5G1P05496 136 aa10.99□□□□□ -0.65
CDH1-202ENST00000422392 C9orf129Q5T035 196 aaKnown RBP10.99□□□□□ -0.65
CDH1-202ENST00000422392 SMR3AQ99954 134 aa10.99□□□□□ -0.65
CDH1-202ENST00000422392 MRPL23Q16540 153 aaKnown RBP10.98□□□□□ -0.65
CDH1-202ENST00000422392 PF4P02776 101 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms