RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 FAM218AQ96MZ4 157 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 C19orf73Q9NVV2 129 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 ITPR2Q14571 2701 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 SHISA2Q6UWI4 295 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 SVIPQ8NHG7 77 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 DYNLRB2Q8TF09 96 aa6.97□□□□□ -1.29
SS18-203ENST00000415083 DGAT2L7PQ6IED9 249 aa6.96□□□□□ -1.3
SS18-203ENST00000415083 TRRAPQ9Y4A5 3859 aa6.96□□□□□ -1.3
SS18-203ENST00000415083 TRAV13-1A0A0B4J241 112 aa6.96□□□□□ -1.3
SS18-203ENST00000415083 K7EQD1 137 aa6.96□□□□□ -1.3
SS18-203ENST00000415083 DNAJC9-AS1A6NH13 148 aa6.95□□□□□ -1.3
SS18-203ENST00000415083 SMIM20Q8N5G0 67 aa6.95□□□□□ -1.3
SS18-203ENST00000415083 CSNK1G2-AS1Q8NCQ2 148 aa6.95□□□□□ -1.3
SS18-203ENST00000415083 CSDC2Q9Y534 153 aaKnown RBP6.95□□□□□ -1.3
SS18-203ENST00000415083 GCN1Q92616 2671 aaKnown RBP6.95□□□□□ -1.3
SS18-203ENST00000415083 NOP10Q9NPE3 64 aaKnown RBP6.95□□□□□ -1.3
SS18-203ENST00000415083 KRTAP1-1Q07627 177 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 HIST2H2BCQ6DN03 193 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 ZNF843Q8N446 348 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 WFDC11Q8NEX6 87 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 SMCR5Q8TEV8 140 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 CCDC168Q8NDH2 2452 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 IGKV2-28A0A075B6P5 120 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 IGKV2D-28P01615 120 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 HERVK_113P63121 156 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 MEIG1Q5JSS6 88 aa6.94□□□□□ -1.3
SS18-203ENST00000415083 ACANP16112 2415 aa6.93□□□□□ -1.3
SS18-203ENST00000415083 IGLV4-60A0A075B6I1 120 aa6.93□□□□□ -1.3
SS18-203ENST00000415083 H3BT86 120 aa6.93□□□□□ -1.3
SS18-203ENST00000415083 STHQ8IWL8 128 aa6.93□□□□□ -1.3
SS18-203ENST00000415083 ANK2Q01484 3957 aa6.93□□□□□ -1.3
SS18-203ENST00000415083 CCL24O00175 119 aa6.93□□□□□ -1.3
SS18-203ENST00000415083 C9orf129Q5T035 196 aaKnown RBP6.92□□□□□ -1.3
SS18-203ENST00000415083 YAE1D1Q9NRH1 226 aa6.92□□□□□ -1.3
SS18-203ENST00000415083 TENM1Q9UKZ4 2725 aa6.92□□□□□ -1.3
SS18-203ENST00000415083 LINC00337Q8N6G1 96 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 IGKV3OR2-268A0A0C4DH90 116 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 TRBV10-1A0A0K0K1A3 114 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 COX7A2LO14548 114 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 DAZ2Q13117 558 aaKnown RBP6.91□□□□□ -1.3
SS18-203ENST00000415083 DAZ4Q86SG3 579 aaKnown RBP6.91□□□□□ -1.3
SS18-203ENST00000415083 Q9HAA7 133 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 DAZ3Q9NR90 486 aaKnown RBP6.91□□□□□ -1.3
SS18-203ENST00000415083 TRAV25A0A0B4J276 109 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 FAM236AA0A1B0GUQ0 79 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 FAM236BA0A1B0GV22 79 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 HERV-K104P63124 156 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 CIRBPQ14011 172 aaKnown RBP6.91□□□□□ -1.3
SS18-203ENST00000415083 PRIMA1Q86XR5 153 aa6.91□□□□□ -1.3
SS18-203ENST00000415083 RPL36AP83881 106 aaKnown RBP6.9□□□□□ -1.3
SS18-203ENST00000415083 LRRC75A-AS1Q8N1F1 130 aa6.9□□□□□ -1.3
SS18-203ENST00000415083 RPL36ALQ969Q0 106 aaKnown RBP6.9□□□□□ -1.3
SS18-203ENST00000415083 FN1P02751 2386 aaKnown RBP6.9□□□□□ -1.3
SS18-203ENST00000415083 MTORP42345 2549 aa6.9□□□□□ -1.31
SS18-203ENST00000415083 FHL2Q14192 279 aa6.89□□□□□ -1.31
SS18-203ENST00000415083 Q6Q795 121 aa6.89□□□□□ -1.31
SS18-203ENST00000415083 SDIM1Q6ZPB5 146 aa6.89□□□□□ -1.31
SS18-203ENST00000415083 SPATA3Q8NHX4 192 aa6.89□□□□□ -1.31
SS18-203ENST00000415083 RPL35AP18077 110 aaKnown RBP6.89□□□□□ -1.31
SS18-203ENST00000415083 LINC01006Q8NI28 216 aa6.89□□□□□ -1.31
SS18-203ENST00000415083 TMEM86BQ8N661 226 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 OVOL2Q9BRP0 275 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 OTOGQ6ZRI0 2925 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 IGHV3OR16-9A0A0B4J2B5 98 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 BAALC-AS2P0C853 105 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 KRTAP10-3P60369 221 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 CMYA5Q8N3K9 4069 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 TOMM7Q9P0U1 55 aa6.88□□□□□ -1.31
SS18-203ENST00000415083 FAM240AA0A1B0GVK7 77 aa6.87□□□□□ -1.31
SS18-203ENST00000415083 IGLV1-51P01701 117 aa6.87□□□□□ -1.31
SS18-203ENST00000415083 TMEM243Q9BU79 118 aa6.87□□□□□ -1.31
SS18-203ENST00000415083 A0A087WYN8 130 aa6.86□□□□□ -1.31
SS18-203ENST00000415083 MIR7-3HGQ8N6C7 128 aa6.86□□□□□ -1.31
SS18-203ENST00000415083 GAGE2AQ6NT46 116 aa6.86□□□□□ -1.31
SS18-203ENST00000415083 TRBV6-4A0A1B0GX49 114 aa6.86□□□□□ -1.31
SS18-203ENST00000415083 COX7B2Q8TF08 81 aa6.86□□□□□ -1.31
SS18-203ENST00000415083 PPDPFQ9H3Y8 114 aa6.86□□□□□ -1.31
SS18-203ENST00000415083 TRBV7-7A0A0K0K1E9 115 aa6.85□□□□□ -1.31
SS18-203ENST00000415083 CCL18P55774 89 aa6.85□□□□□ -1.31
SS18-203ENST00000415083 C16orf74Q96GX8 76 aa6.85□□□□□ -1.31
SS18-203ENST00000415083 TRBV6-8A0A0A6YYG3 113 aa6.85□□□□□ -1.31
SS18-203ENST00000415083 RPL28P46779 137 aaKnown RBP6.85□□□□□ -1.31
SS18-203ENST00000415083 SMIM11BQ8TCY0 68 aa6.84□□□□□ -1.31
SS18-203ENST00000415083 KLK5Q9Y337 293 aaPredicted RBP6.84□□□□□ -1.31
SS18-203ENST00000415083 TRACP01848 142 aa6.84□□□□□ -1.31
SS18-203ENST00000415083 Q8N3U1 123 aa6.84□□□□□ -1.31
SS18-203ENST00000415083 TRGV2A0A075B6R0 118 aa6.83□□□□□ -1.32
SS18-203ENST00000415083 ATP5G1P05496 136 aa6.83□□□□□ -1.32
SS18-203ENST00000415083 C11orf68Q9H3H3 251 aaKnown RBP6.83□□□□□ -1.32
SS18-203ENST00000415083 C16orf95Q9H693 158 aa6.83□□□□□ -1.32
SS18-203ENST00000415083 SS18Q15532 418 aa6.83□□□□□ -1.32
SS18-203ENST00000415083 MRPL23Q16540 153 aaKnown RBP6.83□□□□□ -1.32
SS18-203ENST00000415083 C5orf38Q86SI9 138 aa6.83□□□□□ -1.32
SS18-203ENST00000415083 Q8NDZ9 215 aa6.83□□□□□ -1.32
SS18-203ENST00000415083 HIVEP1P15822 2718 aa6.83□□□□□ -1.32
SS18-203ENST00000415083 A0A087WZ39 114 aa6.82□□□□□ -1.32
SS18-203ENST00000415083 LINC00612Q8N6U2 182 aa6.82□□□□□ -1.32
SS18-203ENST00000415083 SND1-IT1Q9HBX3 110 aa6.82□□□□□ -1.32
SS18-203ENST00000415083 UBE2L6O14933 153 aa6.82□□□□□ -1.32
SS18-203ENST00000415083 PFN2P35080 140 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms