RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SLC25A29Q8N8R3 303 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 PRO0255Q9UI72 69 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 CSDC2Q9Y534 153 aaKnown RBP9.34□□□□□ -0.91
LIMS1-204ENST00000409441 IGLL5B9A064 214 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 FABP2P12104 132 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 LORP23490 312 aaPredicted RBP9.34□□□□□ -0.91
LIMS1-204ENST00000409441 GTSF1LQ9H1H1 148 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 PAX4O43316 350 aa9.33□□□□□ -0.92
LIMS1-204ENST00000409441 TIRAPP58753 221 aa9.33□□□□□ -0.92
LIMS1-204ENST00000409441 SRSF9Q13242 221 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIMS1-204ENST00000409441 DGAT2L7PQ6IED9 249 aa9.33□□□□□ -0.92
LIMS1-204ENST00000409441 VSIG2Q96IQ7 327 aa9.33□□□□□ -0.92
LIMS1-204ENST00000409441 KLK5Q9Y337 293 aaPredicted RBP9.33□□□□□ -0.92
LIMS1-204ENST00000409441 J3QL48 77 aa9.32□□□□□ -0.92
LIMS1-204ENST00000409441 K7ERJ3 54 aa9.32□□□□□ -0.92
LIMS1-204ENST00000409441 UBE2D1P51668 147 aa9.32□□□□□ -0.92
LIMS1-204ENST00000409441 FAM19A3Q7Z5A8 133 aa9.32□□□□□ -0.92
LIMS1-204ENST00000409441 IGHV1-58A0A0C4DH39 117 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 GAGE12JA6NER3 117 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 C3orf84H3BNL1 204 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 H7C423 109 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 GAGE4Q13068 117 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 GAGE5Q13069 117 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 GAGE13Q4V321 117 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 IGLV5-45A0A087WSX0 123 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 H3BNG1 76 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 GEMIN7Q9H840 131 aaKnown RBP9.31□□□□□ -0.92
LIMS1-204ENST00000409441 SPCS1Q9Y6A9 102 aa9.31□□□□□ -0.92
LIMS1-204ENST00000409441 IGHV3-30-3P0DP02 117 aa9.3□□□□□ -0.92
LIMS1-204ENST00000409441 RNASE13Q5GAN3 156 aaKnown RBP9.3□□□□□ -0.92
LIMS1-204ENST00000409441 CASC10Q5T4H9 136 aa9.3□□□□□ -0.92
LIMS1-204ENST00000409441 NTM-AS1Q6ZSK4 140 aa9.3□□□□□ -0.92
LIMS1-204ENST00000409441 NAA38Q9BRA0 125 aaKnown RBP9.3□□□□□ -0.92
LIMS1-204ENST00000409441 LOC100131303A0A0U1RQF7 123 aa9.29□□□□□ -0.92
LIMS1-204ENST00000409441 IGHV3-30P01768 117 aa9.29□□□□□ -0.92
LIMS1-204ENST00000409441 IGHV3-30-5P0DP03 117 aa9.29□□□□□ -0.92
LIMS1-204ENST00000409441 GYPEP15421 78 aa9.29□□□□□ -0.92
LIMS1-204ENST00000409441 TMEM243Q9BU79 118 aa9.29□□□□□ -0.92
LIMS1-204ENST00000409441 TMEM238C9JI98 176 aa9.28□□□□□ -0.92
LIMS1-204ENST00000409441 HERVK_113P63121 156 aa9.28□□□□□ -0.92
LIMS1-204ENST00000409441 APLNQ9ULZ1 77 aa9.28□□□□□ -0.92
LIMS1-204ENST00000409441 IGHV3-64A0A075B6Q5 118 aa9.27□□□□□ -0.92
LIMS1-204ENST00000409441 LINC00694P0DN24 101 aa9.27□□□□□ -0.92
LIMS1-204ENST00000409441 C15orf53Q8NAA6 179 aa9.27□□□□□ -0.92
LIMS1-204ENST00000409441 DNAH7Q8WXX0 4024 aa9.27□□□□□ -0.93
LIMS1-204ENST00000409441 A0A096LPF7 62 aa9.27□□□□□ -0.93
LIMS1-204ENST00000409441 UBE2L6O14933 153 aa9.27□□□□□ -0.93
LIMS1-204ENST00000409441 MRPL23Q16540 153 aaKnown RBP9.27□□□□□ -0.93
LIMS1-204ENST00000409441 TMEM101Q96IK0 257 aa9.27□□□□□ -0.93
LIMS1-204ENST00000409441 ICOSQ9Y6W8 199 aa9.27□□□□□ -0.93
LIMS1-204ENST00000409441 A0A0J9YXY3 114 aa9.26□□□□□ -0.93
LIMS1-204ENST00000409441 C10orf126Q8N4M7 172 aa9.26□□□□□ -0.93
LIMS1-204ENST00000409441 CDC42SE2Q9NRR3 84 aa9.26□□□□□ -0.93
LIMS1-204ENST00000409441 TRAV8-3A0A0A6YYJ7 113 aa9.25□□□□□ -0.93
LIMS1-204ENST00000409441 CSMD3Q7Z407 3707 aa9.24□□□□□ -0.93
LIMS1-204ENST00000409441 SPINK8P0C7L1 97 aa9.24□□□□□ -0.93
LIMS1-204ENST00000409441 RPL24P83731 157 aaKnown RBP9.24□□□□□ -0.93
LIMS1-204ENST00000409441 LINC00242Q5T6M2 205 aa9.24□□□□□ -0.93
LIMS1-204ENST00000409441 CDKN2A-AS1Q9UH64 79 aa9.24□□□□□ -0.93
LIMS1-204ENST00000409441 NDUFA12Q9UI09 145 aa9.24□□□□□ -0.93
LIMS1-204ENST00000409441 TENM2Q9NT68 2774 aa9.24□□□□□ -0.93
LIMS1-204ENST00000409441 TIMM17BO60830 172 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 SH2D6Q7Z4S9 175 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 SPANXDQ9BXN6 97 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 PGPEP1Q9NXJ5 209 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 SPANXCQ9NY87 97 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 IGLV5-39A0A0G2JS06 123 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 LYRM7Q5U5X0 104 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 ATP6V0E2Q8NHE4 81 aa9.23□□□□□ -0.93
LIMS1-204ENST00000409441 TRBV6-8A0A0A6YYG3 113 aa9.22□□□□□ -0.93
LIMS1-204ENST00000409441 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.22□□□□□ -0.93
LIMS1-204ENST00000409441 APOMO95445 188 aa9.22□□□□□ -0.93
LIMS1-204ENST00000409441 CFC1BP0CG36 223 aa9.22□□□□□ -0.93
LIMS1-204ENST00000409441 CFC1P0CG37 223 aa9.22□□□□□ -0.93
LIMS1-204ENST00000409441 COX6A2Q02221 97 aa9.22□□□□□ -0.93
LIMS1-204ENST00000409441 ESRGQ1W209 222 aa9.22□□□□□ -0.93
LIMS1-204ENST00000409441 LYPD5Q6UWN5 251 aa9.22□□□□□ -0.93
LIMS1-204ENST00000409441 A0A0B4J2C4 111 aa9.21□□□□□ -0.93
LIMS1-204ENST00000409441 NDUFA1O15239 70 aa9.21□□□□□ -0.93
LIMS1-204ENST00000409441 LITAFQ99732 161 aa9.21□□□□□ -0.93
LIMS1-204ENST00000409441 TSPAN13O95857 204 aa9.2□□□□□ -0.94
LIMS1-204ENST00000409441 MUSTN1Q8IVN3 82 aa9.2□□□□□ -0.94
LIMS1-204ENST00000409441 PRO1854Q9UHT4 67 aa9.2□□□□□ -0.94
LIMS1-204ENST00000409441 TRAV13-1A0A0B4J241 112 aa9.2□□□□□ -0.94
LIMS1-204ENST00000409441 A4D1N5 150 aa9.2□□□□□ -0.94
LIMS1-204ENST00000409441 CCL18P55774 89 aa9.2□□□□□ -0.94
LIMS1-204ENST00000409441 DYNC2H1Q8NCM8 4307 aaKnown RBP9.19□□□□□ -0.94
LIMS1-204ENST00000409441 SMIM1B2RUZ4 78 aa9.19□□□□□ -0.94
LIMS1-204ENST00000409441 IFITM1P13164 125 aa9.19□□□□□ -0.94
LIMS1-204ENST00000409441 GAGE6Q13070 117 aa9.19□□□□□ -0.94
LIMS1-204ENST00000409441 MIAQ16674 131 aa9.19□□□□□ -0.94
LIMS1-204ENST00000409441 OCIAD2Q56VL3 154 aa9.19□□□□□ -0.94
LIMS1-204ENST00000409441 F8W1H4 67 aa9.18□□□□□ -0.94
LIMS1-204ENST00000409441 K7ERU9 68 aa9.18□□□□□ -0.94
LIMS1-204ENST00000409441 LINC00588Q9Y4M8 146 aa9.18□□□□□ -0.94
LIMS1-204ENST00000409441 CIRBPQ14011 172 aaKnown RBP9.17□□□□□ -0.94
LIMS1-204ENST00000409441 CHCHD5Q9BSY4 110 aa9.17□□□□□ -0.94
LIMS1-204ENST00000409441 STARD9Q9P2P6 4700 aa9.17□□□□□ -0.94
LIMS1-204ENST00000409441 IGHV3-33P01772 117 aa9.16□□□□□ -0.94
LIMS1-204ENST00000409441 HERV-K104P63124 156 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms