RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MRPL35Q9NZE8 188 aaKnown RBP9.66□□□□□ -0.86
SKA1-202ENST00000398452 TRAV8-3A0A0A6YYJ7 113 aa9.65□□□□□ -0.86
SKA1-202ENST00000398452 TRAV8-4A0A0B4J246 113 aa9.65□□□□□ -0.86
SKA1-202ENST00000398452 UBE2D1P51668 147 aa9.65□□□□□ -0.86
SKA1-202ENST00000398452 HERVK_113P63121 156 aa9.65□□□□□ -0.86
SKA1-202ENST00000398452 MIAQ16674 131 aa9.65□□□□□ -0.86
SKA1-202ENST00000398452 PMCHL2Q9BQD1 86 aa9.65□□□□□ -0.86
SKA1-202ENST00000398452 CHAC1Q9BUX1 264 aa9.65□□□□□ -0.86
SKA1-202ENST00000398452 LINC00959A0A1B0GUT2 108 aa9.64□□□□□ -0.87
SKA1-202ENST00000398452 H3BRM9 83 aa9.64□□□□□ -0.87
SKA1-202ENST00000398452 SACSQ9NZJ4 4579 aa9.64□□□□□ -0.87
SKA1-202ENST00000398452 A0A0J9YXV3 536 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 TMEM238LA0A1B0GVL6 79 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 TINCRA0A1B0GVN0 87 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 LY6G6CO95867 125 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 HERVK_113P61574 105 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 S100A12P80511 92 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 TMEM170BQ5T4T1 132 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 LINC00469Q8N7U9 141 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 C1orf43Q9BWL3 253 aa9.63□□□□□ -0.87
SKA1-202ENST00000398452 IGLC3P0DOY3 106 aa9.62□□□□□ -0.87
SKA1-202ENST00000398452 FAM104AQ969W3 186 aa9.62□□□□□ -0.87
SKA1-202ENST00000398452 PRR34Q9NV39 138 aa9.62□□□□□ -0.87
SKA1-202ENST00000398452 IGLV10-54A0A075B6I4 117 aa9.61□□□□□ -0.87
SKA1-202ENST00000398452 IBA57-AS1B1ANH7 110 aa9.61□□□□□ -0.87
SKA1-202ENST00000398452 SMIM6P0DI80 62 aa9.61□□□□□ -0.87
SKA1-202ENST00000398452 XCL1P47992 114 aa9.61□□□□□ -0.87
SKA1-202ENST00000398452 NFE4Q86UQ8 179 aa9.61□□□□□ -0.87
SKA1-202ENST00000398452 ATOH7Q8N100 152 aa9.61□□□□□ -0.87
SKA1-202ENST00000398452 CHCHD10Q8WYQ3 142 aaPredicted RBP9.61□□□□□ -0.87
SKA1-202ENST00000398452 Q9HAA7 133 aa9.61□□□□□ -0.87
SKA1-202ENST00000398452 LYSTQ99698 3801 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 IGLV4-69A0A075B6H9 119 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 IGKV2D-24A0A075B6R9 120 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 C11orf86A6NJI1 115 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 PYY3Q5JQD4 70 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 LINC00242Q5T6M2 205 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 ENHOQ6UWT2 76 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 FAM19A3Q7Z5A8 133 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 COX11Q9Y6N1 276 aa9.6□□□□□ -0.87
SKA1-202ENST00000398452 NBDYA0A0U1RRE5 68 aa9.59□□□□□ -0.87
SKA1-202ENST00000398452 MALP21145 153 aa9.59□□□□□ -0.87
SKA1-202ENST00000398452 CD164L2Q6UWJ8 174 aa9.59□□□□□ -0.87
SKA1-202ENST00000398452 VAMP8Q9BV40 100 aa9.59□□□□□ -0.87
SKA1-202ENST00000398452 TM2D2Q9BX73 214 aa9.59□□□□□ -0.87
SKA1-202ENST00000398452 GAGE12HA6NDE8 117 aa9.58□□□□□ -0.88
SKA1-202ENST00000398452 LINC00476Q8WZB0 136 aa9.58□□□□□ -0.88
SKA1-202ENST00000398452 KRTAP9-9Q9BYP9 154 aa9.58□□□□□ -0.88
SKA1-202ENST00000398452 KRTAP9-4Q9BYQ2 154 aa9.58□□□□□ -0.88
SKA1-202ENST00000398452 COX7A2LO14548 114 aa9.57□□□□□ -0.88
SKA1-202ENST00000398452 PSCAO43653 123 aa9.57□□□□□ -0.88
SKA1-202ENST00000398452 APOMO95445 188 aa9.57□□□□□ -0.88
SKA1-202ENST00000398452 ZNF22P17026 224 aaPredicted RBP9.56□□□□□ -0.88
SKA1-202ENST00000398452 C5orf38Q86SI9 138 aa9.56□□□□□ -0.88
SKA1-202ENST00000398452 CDKN2A-AS1Q9UH64 79 aa9.56□□□□□ -0.88
SKA1-202ENST00000398452 DNAH1Q9P2D7 4330 aa9.56□□□□□ -0.88
SKA1-202ENST00000398452 IGLV5-45A0A087WSX0 123 aa9.55□□□□□ -0.88
SKA1-202ENST00000398452 COX6A2Q02221 97 aa9.55□□□□□ -0.88
SKA1-202ENST00000398452 EPPK1P58107 5090 aaKnown RBP9.54□□□□□ -0.88
SKA1-202ENST00000398452 M0R2N4 97 aa9.54□□□□□ -0.88
SKA1-202ENST00000398452 LINC01561Q8N1V8 128 aa9.54□□□□□ -0.88
SKA1-202ENST00000398452 PAM16Q9Y3D7 125 aa9.54□□□□□ -0.88
SKA1-202ENST00000398452 HYDINQ4G0P3 5121 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 A0A087WZ39 114 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 IGHV3OR16-9A0A0B4J2B5 98 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 hDV102S1A0JD36 115 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 TMEM223A0PJW6 202 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 PRSS2P07478 247 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 SPINK8P0C7L1 97 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 SPATA45Q537H7 98 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 CFAP161Q6P656 301 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 STPG4Q8N801 248 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 PLEKHB2Q96CS7 222 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 C12orf57Q99622 126 aa9.53□□□□□ -0.88
SKA1-202ENST00000398452 IGHV3-64A0A075B6Q5 118 aa9.52□□□□□ -0.89
SKA1-202ENST00000398452 IGHV1-58A0A0C4DH39 117 aa9.52□□□□□ -0.89
SKA1-202ENST00000398452 LGALS3P17931 250 aaKnown RBP9.52□□□□□ -0.89
SKA1-202ENST00000398452 NMUP48645 174 aa9.52□□□□□ -0.89
SKA1-202ENST00000398452 FOXI1Q12951 378 aa9.52□□□□□ -0.89
SKA1-202ENST00000398452 E9PLD3 99 aa9.51□□□□□ -0.89
SKA1-202ENST00000398452 TOMM7Q9P0U1 55 aa9.51□□□□□ -0.89
SKA1-202ENST00000398452 ALMS1Q8TCU4 4167 aa9.51□□□□□ -0.89
SKA1-202ENST00000398452 BIRC6Q9NR09 4857 aa9.5□□□□□ -0.89
SKA1-202ENST00000398452 LEPROTO15243 131 aa9.5□□□□□ -0.89
SKA1-202ENST00000398452 ORAOV1Q8WV07 137 aa9.5□□□□□ -0.89
SKA1-202ENST00000398452 SMIM1B2RUZ4 78 aa9.49□□□□□ -0.89
SKA1-202ENST00000398452 MAJINQ3KP22 176 aa9.49□□□□□ -0.89
SKA1-202ENST00000398452 C6orf223Q8N319 242 aa9.49□□□□□ -0.89
SKA1-202ENST00000398452 KRTAP1-5Q9BYS1 174 aa9.49□□□□□ -0.89
SKA1-202ENST00000398452 PLECQ15149 4684 aaKnown RBP9.49□□□□□ -0.89
SKA1-202ENST00000398452 ZNF561-AS1K7EIQ3 104 aa9.48□□□□□ -0.89
SKA1-202ENST00000398452 ANKRD39Q53RE8 183 aa9.48□□□□□ -0.89
SKA1-202ENST00000398452 C6orf226Q5I0X4 101 aa9.48□□□□□ -0.89
SKA1-202ENST00000398452 LINC00518Q8N0U6 118 aa9.48□□□□□ -0.89
SKA1-202ENST00000398452 COX7B2Q8TF08 81 aa9.48□□□□□ -0.89
SKA1-202ENST00000398452 J3QQQ9 107 aa9.47□□□□□ -0.89
SKA1-202ENST00000398452 CKS1BP61024 79 aa9.47□□□□□ -0.89
SKA1-202ENST00000398452 C1orf134Q5TEV5 83 aa9.47□□□□□ -0.89
SKA1-202ENST00000398452 CDPF1Q6NVV7 123 aa9.47□□□□□ -0.89
SKA1-202ENST00000398452 CXCL5P42830 114 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms