RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PLEKHB2Q96CS7 222 aa7.43□□□□□ -1.22
COL6A3-205ENST00000392004 ERG28Q9UKR5 140 aa7.43□□□□□ -1.22
COL6A3-205ENST00000392004 KLLNB2CW77 178 aa7.43□□□□□ -1.22
COL6A3-205ENST00000392004 SOCS3O14543 225 aa7.43□□□□□ -1.22
COL6A3-205ENST00000392004 SMCPP49901 116 aaPredicted RBP7.43□□□□□ -1.22
COL6A3-205ENST00000392004 KIR2DL5BQ8NHK3 375 aa7.43□□□□□ -1.22
COL6A3-205ENST00000392004 RBMY1A1P0DJD3 496 aaKnown RBP7.43□□□□□ -1.22
COL6A3-205ENST00000392004 RBMY1CP0DJD4 496 aa7.43□□□□□ -1.22
COL6A3-205ENST00000392004 RBMY1FQ15415 496 aaKnown RBP7.43□□□□□ -1.22
COL6A3-205ENST00000392004 CELA1Q9UNI1 258 aa7.43□□□□□ -1.22
COL6A3-205ENST00000392004 K7EIL1 84 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 TCL1BO95988 128 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 UBE2D1P51668 147 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 PRO1854Q9UHT4 67 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 TRAV2A0A0B4J234 112 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 C9JAW5 83 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 M0QXV9 152 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 NXPH4O95158 308 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 BEAN1Q3B7T3 259 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 ANKRD29Q8N6D5 301 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 WFDC9Q8NEX5 89 aa7.42□□□□□ -1.22
COL6A3-205ENST00000392004 PFN2P35080 140 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 SS18Q15532 418 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 IGHV4-4A0A075B6R2 117 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 C10orf126Q8N4M7 172 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 RASL10AQ92737 203 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 C1orf43Q9BWL3 253 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 SMIM9A6NGZ8 99 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 SLC25A20O43772 301 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 UBE2D3P61077 147 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 UBE2D2P62837 147 aa7.41□□□□□ -1.22
COL6A3-205ENST00000392004 PMVKQ15126 192 aa7.4□□□□□ -1.22
COL6A3-205ENST00000392004 ZNF575Q86XF7 245 aa7.4□□□□□ -1.22
COL6A3-205ENST00000392004 CARD19Q96LW7 228 aa7.4□□□□□ -1.22
COL6A3-205ENST00000392004 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.4□□□□□ -1.22
COL6A3-205ENST00000392004 LYRM9A8MSI8 78 aa7.4□□□□□ -1.22
COL6A3-205ENST00000392004 ZNF561-AS1K7EIQ3 104 aa7.4□□□□□ -1.22
COL6A3-205ENST00000392004 LINC00158P58513 81 aa7.4□□□□□ -1.22
COL6A3-205ENST00000392004 TRAV4A0A0B4J268 109 aa7.4□□□□□ -1.23
COL6A3-205ENST00000392004 C11orf86A6NJI1 115 aa7.4□□□□□ -1.23
COL6A3-205ENST00000392004 TRAV10A0A0B4J240 114 aa7.39□□□□□ -1.23
COL6A3-205ENST00000392004 SPANXA1Q9NS26 97 aa7.39□□□□□ -1.23
COL6A3-205ENST00000392004 CFC1BP0CG36 223 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 CFC1P0CG37 223 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 LINC00269Q8N2A0 174 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 LINC00526Q96FQ7 95 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 TMEM141Q96I45 108 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 VWFP04275 2813 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 TRAV8-4A0A0B4J246 113 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 IFITM1P13164 125 aa7.38□□□□□ -1.23
COL6A3-205ENST00000392004 J3QQQ9 107 aa7.37□□□□□ -1.23
COL6A3-205ENST00000392004 OVOL2Q9BRP0 275 aa7.37□□□□□ -1.23
COL6A3-205ENST00000392004 ATXN8Q156A1 80 aa7.37□□□□□ -1.23
COL6A3-205ENST00000392004 ODF3Q96PU9 254 aa7.37□□□□□ -1.23
COL6A3-205ENST00000392004 NTN5Q8WTR8 489 aaPredicted RBP7.36□□□□□ -1.23
COL6A3-205ENST00000392004 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.36□□□□□ -1.23
COL6A3-205ENST00000392004 DAZ2Q13117 558 aaKnown RBP7.36□□□□□ -1.23
COL6A3-205ENST00000392004 HIGD2BQ4VC39 106 aa7.36□□□□□ -1.23
COL6A3-205ENST00000392004 DAZ4Q86SG3 579 aaKnown RBP7.36□□□□□ -1.23
COL6A3-205ENST00000392004 DAZ3Q9NR90 486 aaKnown RBP7.36□□□□□ -1.23
COL6A3-205ENST00000392004 Q9UF83 564 aa7.36□□□□□ -1.23
COL6A3-205ENST00000392004 TGP01266 2768 aa7.36□□□□□ -1.23
COL6A3-205ENST00000392004 A0A0J9YXV3 536 aa7.36□□□□□ -1.23
COL6A3-205ENST00000392004 IL17DQ8TAD2 202 aa7.36□□□□□ -1.23
COL6A3-205ENST00000392004 CRYGDP07320 174 aa7.35□□□□□ -1.23
COL6A3-205ENST00000392004 CIRBPQ14011 172 aaKnown RBP7.35□□□□□ -1.23
COL6A3-205ENST00000392004 COX6CP09669 75 aa7.35□□□□□ -1.23
COL6A3-205ENST00000392004 Q6ZSN1 163 aa7.35□□□□□ -1.23
COL6A3-205ENST00000392004 RPL32P62910 135 aaKnown RBP7.34□□□□□ -1.23
COL6A3-205ENST00000392004 MED14OSP0DP75 135 aa7.34□□□□□ -1.23
COL6A3-205ENST00000392004 NDUFV3P56181 108 aaKnown RBP7.34□□□□□ -1.23
COL6A3-205ENST00000392004 IGKV2-24A0A0C4DH68 120 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 TIMM17AQ99595 171 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 LINC00467Q9BRT7 94 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 IGLV4-69A0A075B6H9 119 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 LINC01620Q4KN68 170 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 C2orf82Q6UX34 121 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 F8WDY8 70 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 M0QY20 66 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 C15orf53Q8NAA6 179 aa7.33□□□□□ -1.24
COL6A3-205ENST00000392004 LEPROTO15243 131 aa7.32□□□□□ -1.24
COL6A3-205ENST00000392004 MUSTN1Q8IVN3 82 aa7.32□□□□□ -1.24
COL6A3-205ENST00000392004 TIMM21Q9BVV7 248 aa7.32□□□□□ -1.24
COL6A3-205ENST00000392004 IGIPA6NJ69 53 aa7.31□□□□□ -1.24
COL6A3-205ENST00000392004 TSPEAR-AS2P59090 65 aa7.31□□□□□ -1.24
COL6A3-205ENST00000392004 EDA2RQ9HAV5 297 aa7.31□□□□□ -1.24
COL6A3-205ENST00000392004 A0A0B4J2C4 111 aa7.31□□□□□ -1.24
COL6A3-205ENST00000392004 X6R8D5 127 aa7.31□□□□□ -1.24
COL6A3-205ENST00000392004 C9orf85Q96MD7 179 aa7.3□□□□□ -1.24
COL6A3-205ENST00000392004 TRBV10-2A0A0K0K1G8 114 aa7.3□□□□□ -1.24
COL6A3-205ENST00000392004 RS1O15537 224 aa7.3□□□□□ -1.24
COL6A3-205ENST00000392004 TSHBP01222 138 aa7.3□□□□□ -1.24
COL6A3-205ENST00000392004 C9orf153Q5TBE3 101 aa7.3□□□□□ -1.24
COL6A3-205ENST00000392004 TRBV10-1A0A0K0K1A3 114 aa7.3□□□□□ -1.24
COL6A3-205ENST00000392004 TRBV6-8A0A0A6YYG3 113 aa7.29□□□□□ -1.24
COL6A3-205ENST00000392004 POLR2KP53803 58 aaKnown RBP7.29□□□□□ -1.24
COL6A3-205ENST00000392004 TEX49A0A1B0GTD5 131 aa7.29□□□□□ -1.24
COL6A3-205ENST00000392004 REG3AQ06141 175 aa7.29□□□□□ -1.24
COL6A3-205ENST00000392004 CAMK2N2Q96S95 79 aa7.29□□□□□ -1.24
COL6A3-205ENST00000392004 TRBV6-4A0A1B0GX49 114 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms