RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 AMELXQ99217 191 aa6.97□□□□□ -1.29
COL6A3-204ENST00000392003 C2CD3Q4AC94 2353 aa6.97□□□□□ -1.29
COL6A3-204ENST00000392003 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.97□□□□□ -1.29
COL6A3-204ENST00000392003 IGKV2-29A2NJV5 120 aaPredicted RBP6.97□□□□□ -1.29
COL6A3-204ENST00000392003 INAFM1C9JVW0 142 aa6.97□□□□□ -1.29
COL6A3-204ENST00000392003 UBE2D3P61077 147 aa6.97□□□□□ -1.29
COL6A3-204ENST00000392003 UBE2D2P62837 147 aa6.97□□□□□ -1.29
COL6A3-204ENST00000392003 Q6ZSN1 163 aa6.97□□□□□ -1.29
COL6A3-204ENST00000392003 IGHV3-30P01768 117 aa6.96□□□□□ -1.29
COL6A3-204ENST00000392003 IGHV3-30-5P0DP03 117 aa6.96□□□□□ -1.29
COL6A3-204ENST00000392003 RNASE13Q5GAN3 156 aaKnown RBP6.96□□□□□ -1.29
COL6A3-204ENST00000392003 MRPS36P82909 103 aaKnown RBP6.96□□□□□ -1.3
COL6A3-204ENST00000392003 RPL36AP83881 106 aaKnown RBP6.96□□□□□ -1.3
COL6A3-204ENST00000392003 CIRBPQ14011 172 aaKnown RBP6.96□□□□□ -1.3
COL6A3-204ENST00000392003 RPL36ALQ969Q0 106 aaKnown RBP6.96□□□□□ -1.3
COL6A3-204ENST00000392003 ZNF561-AS1K7EIQ3 104 aa6.96□□□□□ -1.3
COL6A3-204ENST00000392003 FAM19A1Q7Z5A9 133 aa6.96□□□□□ -1.3
COL6A3-204ENST00000392003 NDUFA11Q86Y39 141 aa6.96□□□□□ -1.3
COL6A3-204ENST00000392003 CHCHD7Q9BUK0 85 aa6.96□□□□□ -1.3
COL6A3-204ENST00000392003 C1orf158Q8N1D5 194 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 C16orf95Q9H693 158 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 UBE2D4Q9Y2X8 147 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 IGHV3-30-3P0DP02 117 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 PRO1854Q9UHT4 67 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 ZFHX3Q15911 3703 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 H7C2G1 150 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 TRACP01848 142 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 BRK1Q8WUW1 75 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 Q9UF83 564 aa6.95□□□□□ -1.3
COL6A3-204ENST00000392003 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.94□□□□□ -1.3
COL6A3-204ENST00000392003 TRAV13-1A0A0B4J241 112 aa6.94□□□□□ -1.3
COL6A3-204ENST00000392003 COX7CP15954 63 aa6.94□□□□□ -1.3
COL6A3-204ENST00000392003 TMEM263Q8WUH6 116 aaKnown RBP6.94□□□□□ -1.3
COL6A3-204ENST00000392003 IGHV1-58A0A0C4DH39 117 aa6.94□□□□□ -1.3
COL6A3-204ENST00000392003 PRSS2P07478 247 aa6.94□□□□□ -1.3
COL6A3-204ENST00000392003 CFC1BP0CG36 223 aa6.94□□□□□ -1.3
COL6A3-204ENST00000392003 CFC1P0CG37 223 aa6.94□□□□□ -1.3
COL6A3-204ENST00000392003 Q1RN00 199 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 NDUFA12Q9UI09 145 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 A0A0J9YXY3 114 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 TRBV10-1A0A0K0K1A3 114 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 TRBV7-7A0A0K0K1E9 115 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 C4orf48Q5BLP8 95 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 PDZD2O15018 2839 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 TRAV8-3A0A0A6YYJ7 113 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 K7EQD1 137 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 CRYGAP11844 174 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 MUSTN1Q8IVN3 82 aa6.93□□□□□ -1.3
COL6A3-204ENST00000392003 SETXQ7Z333 2677 aaKnown RBP6.93□□□□□ -1.3
COL6A3-204ENST00000392003 ADARB2-AS1A8MUL3 147 aa6.92□□□□□ -1.3
COL6A3-204ENST00000392003 Q6ZTI0 123 aa6.92□□□□□ -1.3
COL6A3-204ENST00000392003 NACAE9PAV3 2078 aa6.92□□□□□ -1.3
COL6A3-204ENST00000392003 TRGV2A0A075B6R0 118 aa6.92□□□□□ -1.3
COL6A3-204ENST00000392003 C6orf226Q5I0X4 101 aa6.92□□□□□ -1.3
COL6A3-204ENST00000392003 VSIG2Q96IQ7 327 aa6.92□□□□□ -1.3
COL6A3-204ENST00000392003 NOP10Q9NPE3 64 aaKnown RBP6.92□□□□□ -1.3
COL6A3-204ENST00000392003 DAZ2Q13117 558 aaKnown RBP6.91□□□□□ -1.3
COL6A3-204ENST00000392003 DAZ4Q86SG3 579 aaKnown RBP6.91□□□□□ -1.3
COL6A3-204ENST00000392003 C16orf74Q96GX8 76 aa6.91□□□□□ -1.3
COL6A3-204ENST00000392003 DAZ3Q9NR90 486 aaKnown RBP6.91□□□□□ -1.3
COL6A3-204ENST00000392003 BAHCC1Q9P281 2608 aa6.91□□□□□ -1.3
COL6A3-204ENST00000392003 A0A0B4J2C4 111 aa6.91□□□□□ -1.3
COL6A3-204ENST00000392003 NBPF19A0A087WUL8 3843 aa6.9□□□□□ -1.3
COL6A3-204ENST00000392003 UBE2L6O14933 153 aa6.9□□□□□ -1.3
COL6A3-204ENST00000392003 SMCR5Q8TEV8 140 aa6.9□□□□□ -1.3
COL6A3-204ENST00000392003 FAM104AQ969W3 186 aa6.9□□□□□ -1.3
COL6A3-204ENST00000392003 F8P00451 2351 aa6.9□□□□□ -1.31
COL6A3-204ENST00000392003 IGLV1-51P01701 117 aa6.9□□□□□ -1.31
COL6A3-204ENST00000392003 WFDC10AQ9H1F0 79 aa6.89□□□□□ -1.31
COL6A3-204ENST00000392003 TRGV4A0A0C4DH28 118 aa6.89□□□□□ -1.31
COL6A3-204ENST00000392003 TMEM258P61165 79 aa6.89□□□□□ -1.31
COL6A3-204ENST00000392003 CDKN2A-AS1Q9UH64 79 aa6.89□□□□□ -1.31
COL6A3-204ENST00000392003 IGHV3-33P01772 117 aa6.89□□□□□ -1.31
COL6A3-204ENST00000392003 TMEM243Q9BU79 118 aa6.88□□□□□ -1.31
COL6A3-204ENST00000392003 SS18Q15532 418 aa6.88□□□□□ -1.31
COL6A3-204ENST00000392003 UBE2WQ96B02 151 aa6.88□□□□□ -1.31
COL6A3-204ENST00000392003 SPANXDQ9BXN6 97 aa6.88□□□□□ -1.31
COL6A3-204ENST00000392003 SPANXCQ9NY87 97 aa6.88□□□□□ -1.31
COL6A3-204ENST00000392003 ATRQ13535 2644 aa6.88□□□□□ -1.31
COL6A3-204ENST00000392003 MIAQ16674 131 aa6.87□□□□□ -1.31
COL6A3-204ENST00000392003 A8MZ25 164 aa6.87□□□□□ -1.31
COL6A3-204ENST00000392003 RPL13AP40429 203 aaKnown RBP6.87□□□□□ -1.31
COL6A3-204ENST00000392003 COX6CP09669 75 aa6.86□□□□□ -1.31
COL6A3-204ENST00000392003 TIMM17BO60830 172 aa6.86□□□□□ -1.31
COL6A3-204ENST00000392003 NPC2P61916 151 aa6.86□□□□□ -1.31
COL6A3-204ENST00000392003 IGLV5-45A0A087WSX0 123 aa6.86□□□□□ -1.31
COL6A3-204ENST00000392003 OXLD1Q5BKU9 147 aa6.86□□□□□ -1.31
COL6A3-204ENST00000392003 COPS9Q8WXC6 57 aa6.86□□□□□ -1.31
COL6A3-204ENST00000392003 NDUFA1O15239 70 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 ATXN8Q156A1 80 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 TRBV6-4A0A1B0GX49 114 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 GIG44P09565 113 aaPredicted RBP6.85□□□□□ -1.31
COL6A3-204ENST00000392003 LINC00242Q5T6M2 205 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 C2orf82Q6UX34 121 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 NTM-AS1Q6ZSK4 140 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 LITAFQ99732 161 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 COX6A2Q02221 97 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 ADAMTSL4-AS1Q5T5F5 129 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 OVOL2Q9BRP0 275 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 Q9H8V8 135 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms