RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SPEGQ15772 3267 aa5.27□□□□□ -1.57
VPS13A-202ENST00000357409 C10orf91Q5T1B1 145 aa5.27□□□□□ -1.57
VPS13A-202ENST00000357409 VCANP13611 3396 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 MALRD1Q5VYJ5 2156 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 FAM19A3Q7Z5A8 133 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 CDC42SE2Q9NRR3 84 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 IGKV2D-30A0A075B6S6 120 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 IGKV2-30P06310 120 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 PLXNA2O75051 1894 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 KRTAP24-1Q3LI83 254 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 NCKAP5O14513 1909 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 RANBP2P49792 3224 aaKnown RBP5.26□□□□□ -1.57
VPS13A-202ENST00000357409 TRBV27A0A0K0K1C4 114 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 TRBV10-3A0A0K0K1G6 114 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 KMT2EQ8IZD2 1858 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 M0R378 163 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 CD164L2Q6UWJ8 174 aa5.26□□□□□ -1.57
VPS13A-202ENST00000357409 COA6Q5JTJ3 125 aaKnown RBP5.25□□□□□ -1.57
VPS13A-202ENST00000357409 A0A087WYN8 130 aa5.25□□□□□ -1.57
VPS13A-202ENST00000357409 FHL2Q14192 279 aa5.25□□□□□ -1.57
VPS13A-202ENST00000357409 A6NED7 52 aa5.25□□□□□ -1.57
VPS13A-202ENST00000357409 A0A087WSZ3 146 aa5.25□□□□□ -1.57
VPS13A-202ENST00000357409 ATOX1O00244 68 aa5.25□□□□□ -1.57
VPS13A-202ENST00000357409 LYPD5Q6UWN5 251 aa5.25□□□□□ -1.57
VPS13A-202ENST00000357409 PRYO14603 147 aa5.24□□□□□ -1.57
VPS13A-202ENST00000357409 REG3GQ6UW15 175 aa5.24□□□□□ -1.57
VPS13A-202ENST00000357409 MGAMO43451 1857 aa5.24□□□□□ -1.57
VPS13A-202ENST00000357409 C16orf90A8MZG2 172 aa5.24□□□□□ -1.57
VPS13A-202ENST00000357409 ZNF106Q9H2Y7 1883 aaKnown RBP5.24□□□□□ -1.57
VPS13A-202ENST00000357409 SMCR5Q8TEV8 140 aa5.24□□□□□ -1.57
VPS13A-202ENST00000357409 C2orf48Q96LS8 159 aa5.24□□□□□ -1.57
VPS13A-202ENST00000357409 J3QL48 77 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 Q9BRP9 147 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 LINC00337Q8N6G1 96 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 FAM186AA6NE01 2351 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 ZFHX2Q9C0A1 2572 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-202ENST00000357409 USP34Q70CQ2 3546 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 SERP2Q8N6R1 65 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 LINC00575Q6W349 94 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 PRR15LQ9BU68 103 aa5.23□□□□□ -1.57
VPS13A-202ENST00000357409 COL6A3P12111 3177 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 C22orf24Q9Y442 160 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 IGLV1-40P01703 118 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 RPL37AP61513 92 aaKnown RBP5.22□□□□□ -1.57
VPS13A-202ENST00000357409 LST1O00453 97 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 NRACQ8N912 160 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 IBA57-AS1B1ANH7 110 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 K7ERS5 55 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 H3BT86 120 aa5.22□□□□□ -1.57
VPS13A-202ENST00000357409 FHL3Q13643 280 aa5.21□□□□□ -1.57
VPS13A-202ENST00000357409 C2orf16Q68DN1 1984 aa5.21□□□□□ -1.57
VPS13A-202ENST00000357409 EBI3Q14213 229 aa5.21□□□□□ -1.58
VPS13A-202ENST00000357409 SPANXB1Q9NS25 103 aaPredicted RBP5.21□□□□□ -1.58
VPS13A-202ENST00000357409 ARHGAP32A7KAX9 2087 aa5.21□□□□□ -1.58
VPS13A-202ENST00000357409 PRUNE2Q8WUY3 3088 aa5.21□□□□□ -1.58
VPS13A-202ENST00000357409 CNOT1A5YKK6 2376 aaKnown RBP5.21□□□□□ -1.58
VPS13A-202ENST00000357409 HCG22E2RYF7 251 aa5.21□□□□□ -1.58
VPS13A-202ENST00000357409 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.2□□□□□ -1.58
VPS13A-202ENST00000357409 PSPHP1O15172 72 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 IGLV1-51P01701 117 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 RPL28P46779 137 aaKnown RBP5.2□□□□□ -1.58
VPS13A-202ENST00000357409 MOBPQ13875 183 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 TRBV7-6A0A0J9YX20 115 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 ZNF73O43830 326 aaPredicted RBP5.2□□□□□ -1.58
VPS13A-202ENST00000357409 SPANXDQ9BXN6 97 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 C11orf1Q9H5F2 150 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 EIF4EBP1Q13541 118 aaPredicted RBP5.2□□□□□ -1.58
VPS13A-202ENST00000357409 ACACAQ13085 2346 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 FSTL3O95633 263 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 MYO15AQ9UKN7 3530 aa5.2□□□□□ -1.58
VPS13A-202ENST00000357409 GVINP1Q7Z2Y8 2422 aa5.19□□□□□ -1.58
VPS13A-202ENST00000357409 Q8N6K4 173 aa5.19□□□□□ -1.58
VPS13A-202ENST00000357409 NDUFC2O95298 119 aa5.19□□□□□ -1.58
VPS13A-202ENST00000357409 TECTAO75443 2155 aa5.19□□□□□ -1.58
VPS13A-202ENST00000357409 C9orf92A6NGG3 77 aa5.19□□□□□ -1.58
VPS13A-202ENST00000357409 TSPEAR-AS2P59090 65 aa5.19□□□□□ -1.58
VPS13A-202ENST00000357409 ADAMTSL4-AS1Q5T5F5 129 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 LINC00643Q86TS7 51 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 PTPRQQ9UMZ3 2332 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 ANAPC11Q9NYG5 84 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 FAM229AH3BQW9 127 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 ANAPC1Q9H1A4 1944 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 H3BQ85 93 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 EXPH5Q8NEV8 1989 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 CHCHD7Q9BUK0 85 aa5.18□□□□□ -1.58
VPS13A-202ENST00000357409 A0A0G2JQZ4 141 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 A0A1W2PNN7 141 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 H7C423 109 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 DNAH10OSP0CZ25 163 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 MRPL55Q7Z7F7 128 aaKnown RBP5.17□□□□□ -1.58
VPS13A-202ENST00000357409 CCDC179H3BU77 68 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 CRYGAP11844 174 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 KIAA0087Q14695 138 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 OTOGLQ3ZCN5 2332 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 TRBV30A0A0K0K1B3 111 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 C7orf65Q6ZTY9 151 aa5.17□□□□□ -1.58
VPS13A-202ENST00000357409 ZNF706Q9Y5V0 76 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-202ENST00000357409 LINC00315P59091 139 aa5.16□□□□□ -1.58
VPS13A-202ENST00000357409 EYSQ5T1H1 3165 aa5.16□□□□□ -1.58
VPS13A-202ENST00000357409 POLR2KP53803 58 aaKnown RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms