RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 SMIM1B2RUZ4 78 aa10.48□□□□□ -0.73
CLCNKA-201ENST00000331433 NDUFA1O15239 70 aa10.48□□□□□ -0.73
CLCNKA-201ENST00000331433 Q1RN00 199 aa10.47□□□□□ -0.73
CLCNKA-201ENST00000331433 FAM19A3Q7Z5A8 133 aa10.47□□□□□ -0.73
CLCNKA-201ENST00000331433 ZNF625Q96I27 306 aaPredicted RBP10.47□□□□□ -0.73
CLCNKA-201ENST00000331433 Q9H8V8 135 aa10.47□□□□□ -0.73
CLCNKA-201ENST00000331433 CIDEAO60543 219 aa10.47□□□□□ -0.73
CLCNKA-201ENST00000331433 INSL3P51460 131 aa10.47□□□□□ -0.73
CLCNKA-201ENST00000331433 GAGE6Q13070 117 aa10.47□□□□□ -0.73
CLCNKA-201ENST00000331433 TRBV20-1A0A075B6N2 111 aa10.46□□□□□ -0.74
CLCNKA-201ENST00000331433 A0A0U1RRA0 63 aa10.45□□□□□ -0.74
CLCNKA-201ENST00000331433 SMAGPQ0VAQ4 97 aa10.45□□□□□ -0.74
CLCNKA-201ENST00000331433 X6R8D5 127 aa10.45□□□□□ -0.74
CLCNKA-201ENST00000331433 IGKV3OR2-268A0A0C4DH90 116 aa10.45□□□□□ -0.74
CLCNKA-201ENST00000331433 F5H768 121 aa10.45□□□□□ -0.74
CLCNKA-201ENST00000331433 TRBV6-8A0A0A6YYG3 113 aa10.44□□□□□ -0.74
CLCNKA-201ENST00000331433 TIMM17BO60830 172 aa10.44□□□□□ -0.74
CLCNKA-201ENST00000331433 TEP1Q99973 2627 aaKnown RBP10.44□□□□□ -0.74
CLCNKA-201ENST00000331433 IGLV4-60A0A075B6I1 120 aa10.44□□□□□ -0.74
CLCNKA-201ENST00000331433 KIR2DL5BQ8NHK3 375 aa10.43□□□□□ -0.74
CLCNKA-201ENST00000331433 CHCHD5Q9BSY4 110 aa10.43□□□□□ -0.74
CLCNKA-201ENST00000331433 C9orf66Q5T8R8 295 aa10.43□□□□□ -0.74
CLCNKA-201ENST00000331433 LINC00612Q8N6U2 182 aa10.42□□□□□ -0.74
CLCNKA-201ENST00000331433 H7C423 109 aa10.42□□□□□ -0.74
CLCNKA-201ENST00000331433 TRIAP1O43715 76 aa10.42□□□□□ -0.74
CLCNKA-201ENST00000331433 CIRBPQ14011 172 aaKnown RBP10.42□□□□□ -0.74
CLCNKA-201ENST00000331433 PRIMA1Q86XR5 153 aa10.42□□□□□ -0.74
CLCNKA-201ENST00000331433 J3QR89 54 aa10.41□□□□□ -0.74
CLCNKA-201ENST00000331433 DEFB4AO15263 64 aa10.41□□□□□ -0.74
CLCNKA-201ENST00000331433 GYPEP15421 78 aa10.41□□□□□ -0.74
CLCNKA-201ENST00000331433 DEFB135Q30KP9 77 aa10.41□□□□□ -0.74
CLCNKA-201ENST00000331433 IFITM1P13164 125 aa10.4□□□□□ -0.74
CLCNKA-201ENST00000331433 LINC00308Q8TCZ7 52 aa10.4□□□□□ -0.75
CLCNKA-201ENST00000331433 F8P00451 2351 aa10.4□□□□□ -0.75
CLCNKA-201ENST00000331433 TRBV30A0A0K0K1B3 111 aa10.39□□□□□ -0.75
CLCNKA-201ENST00000331433 FOXI1Q12951 378 aa10.39□□□□□ -0.75
CLCNKA-201ENST00000331433 MEIG1Q5JSS6 88 aa10.39□□□□□ -0.75
CLCNKA-201ENST00000331433 FAM222AQ5U5X8 452 aa10.39□□□□□ -0.75
CLCNKA-201ENST00000331433 ICOSQ9Y6W8 199 aa10.39□□□□□ -0.75
CLCNKA-201ENST00000331433 A0A096LPF7 62 aa10.39□□□□□ -0.75
CLCNKA-201ENST00000331433 C9JAW5 83 aa10.39□□□□□ -0.75
CLCNKA-201ENST00000331433 ATP6V0E2Q8NHE4 81 aa10.38□□□□□ -0.75
CLCNKA-201ENST00000331433 RNF183Q96D59 192 aa10.38□□□□□ -0.75
CLCNKA-201ENST00000331433 SMIM9A6NGZ8 99 aa10.38□□□□□ -0.75
CLCNKA-201ENST00000331433 RPL13AP40429 203 aaKnown RBP10.38□□□□□ -0.75
CLCNKA-201ENST00000331433 SOSTDC1Q6X4U4 206 aa10.38□□□□□ -0.75
CLCNKA-201ENST00000331433 SLC25A20O43772 301 aa10.37□□□□□ -0.75
CLCNKA-201ENST00000331433 TEN1Q86WV5 123 aa10.37□□□□□ -0.75
CLCNKA-201ENST00000331433 CITED1Q99966 193 aa10.37□□□□□ -0.75
CLCNKA-201ENST00000331433 CYSRT1A8MQ03 144 aa10.36□□□□□ -0.75
CLCNKA-201ENST00000331433 TOMM7Q9P0U1 55 aa10.36□□□□□ -0.75
CLCNKA-201ENST00000331433 GAGE12HA6NDE8 117 aa10.36□□□□□ -0.75
CLCNKA-201ENST00000331433 ATXN8Q156A1 80 aa10.36□□□□□ -0.75
CLCNKA-201ENST00000331433 ANKRD29Q8N6D5 301 aa10.36□□□□□ -0.75
CLCNKA-201ENST00000331433 CARD19Q96LW7 228 aa10.36□□□□□ -0.75
CLCNKA-201ENST00000331433 PRO0255Q9UI72 69 aa10.36□□□□□ -0.75
CLCNKA-201ENST00000331433 IGHV3OR16-9A0A0B4J2B5 98 aa10.35□□□□□ -0.75
CLCNKA-201ENST00000331433 TMEM262E9PQX1 116 aa10.35□□□□□ -0.75
CLCNKA-201ENST00000331433 COX7B2Q8TF08 81 aa10.35□□□□□ -0.75
CLCNKA-201ENST00000331433 MAST4O15021 2626 aa10.35□□□□□ -0.75
CLCNKA-201ENST00000331433 LINC01620Q4KN68 170 aa10.34□□□□□ -0.75
CLCNKA-201ENST00000331433 HERV-K104P63124 156 aa10.34□□□□□ -0.75
CLCNKA-201ENST00000331433 C5orf38Q86SI9 138 aa10.34□□□□□ -0.75
CLCNKA-201ENST00000331433 IGHV4-28A0A0C4DH34 117 aa10.33□□□□□ -0.76
CLCNKA-201ENST00000331433 PPDPFLQ8WWR9 84 aa10.33□□□□□ -0.76
CLCNKA-201ENST00000331433 CLEC2BQ92478 149 aa10.33□□□□□ -0.76
CLCNKA-201ENST00000331433 LYRM9A8MSI8 78 aa10.33□□□□□ -0.76
CLCNKA-201ENST00000331433 PAX4O43316 350 aa10.33□□□□□ -0.76
CLCNKA-201ENST00000331433 APOC4P55056 127 aa10.33□□□□□ -0.76
CLCNKA-201ENST00000331433 LINC00959A0A1B0GUT2 108 aa10.32□□□□□ -0.76
CLCNKA-201ENST00000331433 SPATA25Q9BR10 227 aa10.32□□□□□ -0.76
CLCNKA-201ENST00000331433 COX6CP09669 75 aa10.32□□□□□ -0.76
CLCNKA-201ENST00000331433 CLPSL2Q6UWE3 100 aa10.32□□□□□ -0.76
CLCNKA-201ENST00000331433 A0A087WZ39 114 aa10.31□□□□□ -0.76
CLCNKA-201ENST00000331433 CELA1Q9UNI1 258 aa10.31□□□□□ -0.76
CLCNKA-201ENST00000331433 XCL1P47992 114 aa10.3□□□□□ -0.76
CLCNKA-201ENST00000331433 SIGMAR1Q99720 223 aa10.3□□□□□ -0.76
CLCNKA-201ENST00000331433 COPS9Q8WXC6 57 aa10.3□□□□□ -0.76
CLCNKA-201ENST00000331433 DAD1P61803 113 aa10.29□□□□□ -0.76
CLCNKA-201ENST00000331433 MIR7-3HGQ8N6C7 128 aa10.29□□□□□ -0.76
CLCNKA-201ENST00000331433 Q8NAQ8 132 aa10.29□□□□□ -0.76
CLCNKA-201ENST00000331433 TRBV10-2A0A0K0K1G8 114 aa10.28□□□□□ -0.76
CLCNKA-201ENST00000331433 A0A1B0GUV1 79 aa10.28□□□□□ -0.76
CLCNKA-201ENST00000331433 C11orf68Q9H3H3 251 aaKnown RBP10.28□□□□□ -0.76
CLCNKA-201ENST00000331433 M0QXV9 152 aa10.28□□□□□ -0.76
CLCNKA-201ENST00000331433 Q8N3U1 123 aa10.28□□□□□ -0.76
CLCNKA-201ENST00000331433 NTN5Q8WTR8 489 aaPredicted RBP10.28□□□□□ -0.76
CLCNKA-201ENST00000331433 TRAV26-1A0A087WT03 109 aa10.27□□□□□ -0.77
CLCNKA-201ENST00000331433 LST1O00453 97 aa10.27□□□□□ -0.77
CLCNKA-201ENST00000331433 IGHV4-30-4P0DP06 118 aa10.27□□□□□ -0.77
CLCNKA-201ENST00000331433 WFDC9Q8NEX5 89 aa10.27□□□□□ -0.77
CLCNKA-201ENST00000331433 CDIP1Q9H305 208 aa10.27□□□□□ -0.77
CLCNKA-201ENST00000331433 LINC00158P58513 81 aa10.26□□□□□ -0.77
CLCNKA-201ENST00000331433 HTN3P15516 51 aa10.26□□□□□ -0.77
CLCNKA-201ENST00000331433 SS18Q15532 418 aa10.26□□□□□ -0.77
CLCNKA-201ENST00000331433 MIFP14174 115 aa10.25□□□□□ -0.77
CLCNKA-201ENST00000331433 PFN2P35080 140 aa10.25□□□□□ -0.77
CLCNKA-201ENST00000331433 C2orf82Q6UX34 121 aa10.25□□□□□ -0.77
CLCNKA-201ENST00000331433 LINC00269Q8N2A0 174 aa10.25□□□□□ -0.77
CLCNKA-201ENST00000331433 TEX49A0A1B0GTD5 131 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms