RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 VCANP13611 3396 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 SLPIP03973 132 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 RBM3P98179 157 aaKnown RBP10.64□□□□□ -0.71
TCOF1-201ENST00000323668 SDIM1Q6ZPB5 146 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 SZT2Q5T011 3432 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 J3QKU1 62 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 CCDC179H3BU77 68 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 LINC00694P0DN24 101 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 CLUHP3Q96NS8 147 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 CAMK2N2Q96S95 79 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 KLK12Q9UKR0 248 aa10.64□□□□□ -0.71
TCOF1-201ENST00000323668 WFDC10AQ9H1F0 79 aa10.63□□□□□ -0.71
TCOF1-201ENST00000323668 CSDC2Q9Y534 153 aaKnown RBP10.63□□□□□ -0.71
TCOF1-201ENST00000323668 JMJD1CQ15652 2540 aa10.62□□□□□ -0.71
TCOF1-201ENST00000323668 C1orf158Q8N1D5 194 aa10.62□□□□□ -0.71
TCOF1-201ENST00000323668 SMIM11BQ8TCY0 68 aa10.62□□□□□ -0.71
TCOF1-201ENST00000323668 hADV29S1A0JD25 119 aa10.62□□□□□ -0.71
TCOF1-201ENST00000323668 REG3AQ06141 175 aa10.61□□□□□ -0.71
TCOF1-201ENST00000323668 CHCHD10Q8WYQ3 142 aaPredicted RBP10.61□□□□□ -0.71
TCOF1-201ENST00000323668 ZNF462Q96JM2 2506 aa10.61□□□□□ -0.71
TCOF1-201ENST00000323668 SMIM9A6NGZ8 99 aa10.61□□□□□ -0.71
TCOF1-201ENST00000323668 CCL18P55774 89 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 H3BQ85 93 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 J3KT08 172 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 LINC00959A0A1B0GUT2 108 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 C3orf22Q8N5N4 141 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 LINC01006Q8NI28 216 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 C1orf43Q9BWL3 253 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 F8WEM9 126 aa10.6□□□□□ -0.71
TCOF1-201ENST00000323668 IGKV2D-24A0A075B6R9 120 aa10.59□□□□□ -0.71
TCOF1-201ENST00000323668 RPL18AQ02543 176 aaKnown RBP10.59□□□□□ -0.71
TCOF1-201ENST00000323668 MGAQ8IWI9 3026 aa10.59□□□□□ -0.71
TCOF1-201ENST00000323668 DIRC1Q969H9 104 aa10.59□□□□□ -0.71
TCOF1-201ENST00000323668 ANKRD17O75179 2603 aaKnown RBP10.58□□□□□ -0.72
TCOF1-201ENST00000323668 LYRM9A8MSI8 78 aa10.58□□□□□ -0.72
TCOF1-201ENST00000323668 RPL28P46779 137 aaKnown RBP10.57□□□□□ -0.72
TCOF1-201ENST00000323668 PDE6GP18545 87 aa10.57□□□□□ -0.72
TCOF1-201ENST00000323668 SBSPONQ8IVN8 264 aa10.57□□□□□ -0.72
TCOF1-201ENST00000323668 C6orf99Q4VX62 202 aa10.56□□□□□ -0.72
TCOF1-201ENST00000323668 BBC3Q96PG8 261 aaPredicted RBP10.56□□□□□ -0.72
TCOF1-201ENST00000323668 TRAV23DV6A0A075B6W5 121 aa10.56□□□□□ -0.72
TCOF1-201ENST00000323668 C11orf72Q8NBR9 251 aa10.56□□□□□ -0.72
TCOF1-201ENST00000323668 DEFB105AQ8NG35 78 aa10.55□□□□□ -0.72
TCOF1-201ENST00000323668 Q9UF83 564 aa10.55□□□□□ -0.72
TCOF1-201ENST00000323668 KRTAP10-9P60411 292 aa10.54□□□□□ -0.72
TCOF1-201ENST00000323668 CD164L2Q6UWJ8 174 aa10.54□□□□□ -0.72
TCOF1-201ENST00000323668 IGLV4-60A0A075B6I1 120 aa10.54□□□□□ -0.72
TCOF1-201ENST00000323668 A0A087WZ39 114 aa10.53□□□□□ -0.72
TCOF1-201ENST00000323668 IGLV5-39A0A0G2JS06 123 aa10.53□□□□□ -0.72
TCOF1-201ENST00000323668 ACANP16112 2415 aa10.53□□□□□ -0.72
TCOF1-201ENST00000323668 ATP5EP2Q5VTU8 51 aa10.53□□□□□ -0.72
TCOF1-201ENST00000323668 MUC4Q99102 2169 aa10.53□□□□□ -0.72
TCOF1-201ENST00000323668 DEFB121Q5J5C9 76 aa10.52□□□□□ -0.72
TCOF1-201ENST00000323668 Q8IZM0 81 aa10.52□□□□□ -0.73
TCOF1-201ENST00000323668 COX7BP24311 80 aa10.52□□□□□ -0.73
TCOF1-201ENST00000323668 LINC00482Q8N8I6 264 aa10.52□□□□□ -0.73
TCOF1-201ENST00000323668 UPK3BQ9BT76 320 aa10.52□□□□□ -0.73
TCOF1-201ENST00000323668 ZNF843Q8N446 348 aa10.51□□□□□ -0.73
TCOF1-201ENST00000323668 NREPQ16612 68 aa10.51□□□□□ -0.73
TCOF1-201ENST00000323668 ZNF575Q86XF7 245 aa10.51□□□□□ -0.73
TCOF1-201ENST00000323668 CELSR3Q9NYQ7 3312 aa10.51□□□□□ -0.73
TCOF1-201ENST00000323668 COX7CP15954 63 aa10.51□□□□□ -0.73
TCOF1-201ENST00000323668 USP17L23D6RBM5 183 aa10.5□□□□□ -0.73
TCOF1-201ENST00000323668 PSCAO43653 123 aa10.5□□□□□ -0.73
TCOF1-201ENST00000323668 DSPP15924 2871 aaKnown RBP10.5□□□□□ -0.73
TCOF1-201ENST00000323668 FUSP35637 526 aaKnown RBP eCLIP10.5□□□□□ -0.73
TCOF1-201ENST00000323668 ENHOQ6UWT2 76 aa10.5□□□□□ -0.73
TCOF1-201ENST00000323668 IGLV1-51P01701 117 aa10.49□□□□□ -0.73
TCOF1-201ENST00000323668 SERP2Q8N6R1 65 aa10.49□□□□□ -0.73
TCOF1-201ENST00000323668 IGLV5-45A0A087WSX0 123 aa10.49□□□□□ -0.73
TCOF1-201ENST00000323668 C20orf197Q8N268 126 aa10.49□□□□□ -0.73
TCOF1-201ENST00000323668 RMI2Q96E14 147 aa10.49□□□□□ -0.73
TCOF1-201ENST00000323668 XAGE1AQ9HD64 81 aa10.49□□□□□ -0.73
TCOF1-201ENST00000323668 FHL2Q14192 279 aa10.48□□□□□ -0.73
TCOF1-201ENST00000323668 HIGD2BQ4VC39 106 aa10.48□□□□□ -0.73
TCOF1-201ENST00000323668 ETDCA0A1B0GVM5 59 aa10.48□□□□□ -0.73
TCOF1-201ENST00000323668 NBEAQ8NFP9 2946 aa10.48□□□□□ -0.73
TCOF1-201ENST00000323668 A0A087WYN8 130 aa10.48□□□□□ -0.73
TCOF1-201ENST00000323668 NTM-AS1Q6ZSK4 140 aa10.47□□□□□ -0.73
TCOF1-201ENST00000323668 UBE2DNLQ8IWF7 75 aa10.47□□□□□ -0.73
TCOF1-201ENST00000323668 COX17Q14061 63 aa10.47□□□□□ -0.73
TCOF1-201ENST00000323668 Q6JHZ5 121 aa10.47□□□□□ -0.73
TCOF1-201ENST00000323668 Q8N2B8 174 aa10.47□□□□□ -0.73
TCOF1-201ENST00000323668 LINC00337Q8N6G1 96 aa10.46□□□□□ -0.73
TCOF1-201ENST00000323668 LINC00526Q96FQ7 95 aa10.46□□□□□ -0.73
TCOF1-201ENST00000323668 MIFP14174 115 aa10.45□□□□□ -0.74
TCOF1-201ENST00000323668 Q6ZQY7 126 aa10.45□□□□□ -0.74
TCOF1-201ENST00000323668 KIR2DL5BQ8NHK3 375 aa10.45□□□□□ -0.74
TCOF1-201ENST00000323668 LITAFQ99732 161 aa10.45□□□□□ -0.74
TCOF1-201ENST00000323668 TRBV7-7A0A0K0K1E9 115 aa10.44□□□□□ -0.74
TCOF1-201ENST00000323668 HILS1P60008 231 aa10.44□□□□□ -0.74
TCOF1-201ENST00000323668 IGHV4-28A0A0C4DH34 117 aa10.44□□□□□ -0.74
TCOF1-201ENST00000323668 SHISA2Q6UWI4 295 aa10.44□□□□□ -0.74
TCOF1-201ENST00000323668 ZNF292O60281 2723 aa10.44□□□□□ -0.74
TCOF1-201ENST00000323668 UBE2BP63146 152 aa10.43□□□□□ -0.74
TCOF1-201ENST00000323668 SOSTDC1Q6X4U4 206 aa10.43□□□□□ -0.74
TCOF1-201ENST00000323668 CCKP06307 115 aa10.42□□□□□ -0.74
TCOF1-201ENST00000323668 PRR3P79522 188 aaKnown RBP10.42□□□□□ -0.74
TCOF1-201ENST00000323668 FAM110AQ9BQ89 295 aa10.42□□□□□ -0.74
TCOF1-201ENST00000323668 IGHV3OR16-9A0A0B4J2B5 98 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms