RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 SYCNQ0VAF6 134 aa9.32□□□□□ -0.92
COL3A1-201ENST00000304636 NTM-AS1Q6ZSK4 140 aa9.32□□□□□ -0.92
COL3A1-201ENST00000304636 C14orf177Q52M58 125 aa9.32□□□□□ -0.92
COL3A1-201ENST00000304636 DHRS4-AS1Q9P1J3 65 aa9.32□□□□□ -0.92
COL3A1-201ENST00000304636 SERP1Q9Y6X1 66 aa9.32□□□□□ -0.92
COL3A1-201ENST00000304636 FAM19A1Q7Z5A9 133 aa9.32□□□□□ -0.92
COL3A1-201ENST00000304636 ZNF73O43830 326 aaPredicted RBP9.31□□□□□ -0.92
COL3A1-201ENST00000304636 IGKV2-24A0A0C4DH68 120 aa9.31□□□□□ -0.92
COL3A1-201ENST00000304636 COX6A2Q02221 97 aa9.31□□□□□ -0.92
COL3A1-201ENST00000304636 Q8N814 137 aa9.31□□□□□ -0.92
COL3A1-201ENST00000304636 SPG11Q96JI7 2443 aa9.3□□□□□ -0.92
COL3A1-201ENST00000304636 CSDC2Q9Y534 153 aaKnown RBP9.3□□□□□ -0.92
COL3A1-201ENST00000304636 BRI3O95415 125 aa9.3□□□□□ -0.92
COL3A1-201ENST00000304636 WFDC10BQ8IUB3 73 aa9.3□□□□□ -0.92
COL3A1-201ENST00000304636 ZNF580Q9UK33 172 aa9.3□□□□□ -0.92
COL3A1-201ENST00000304636 A0A087WVE0 104 aa9.3□□□□□ -0.92
COL3A1-201ENST00000304636 K7ERS5 55 aa9.3□□□□□ -0.92
COL3A1-201ENST00000304636 A0A087WYN8 130 aa9.3□□□□□ -0.92
COL3A1-201ENST00000304636 LELP1Q5T871 98 aa9.29□□□□□ -0.92
COL3A1-201ENST00000304636 C18orf65Q6ZTR6 163 aa9.29□□□□□ -0.92
COL3A1-201ENST00000304636 HRCT1Q6UXD1 115 aa9.29□□□□□ -0.92
COL3A1-201ENST00000304636 EDN2P20800 178 aa9.29□□□□□ -0.92
COL3A1-201ENST00000304636 ARHGAP32A7KAX9 2087 aa9.28□□□□□ -0.92
COL3A1-201ENST00000304636 A0A087WZ39 114 aa9.28□□□□□ -0.92
COL3A1-201ENST00000304636 DSCAMO60469 2012 aa9.28□□□□□ -0.92
COL3A1-201ENST00000304636 A0A0J9YWU9 116 aa9.28□□□□□ -0.92
COL3A1-201ENST00000304636 A6NED7 52 aa9.28□□□□□ -0.92
COL3A1-201ENST00000304636 KLK5Q9Y337 293 aaPredicted RBP9.28□□□□□ -0.92
COL3A1-201ENST00000304636 PRO3102Q9H379 93 aa9.28□□□□□ -0.92
COL3A1-201ENST00000304636 TRBV7-7A0A0K0K1E9 115 aa9.27□□□□□ -0.92
COL3A1-201ENST00000304636 PRR4Q16378 134 aa9.27□□□□□ -0.92
COL3A1-201ENST00000304636 IGKV2-28A0A075B6P5 120 aa9.27□□□□□ -0.93
COL3A1-201ENST00000304636 IGKV2D-28P01615 120 aa9.27□□□□□ -0.93
COL3A1-201ENST00000304636 C1orf195Q5TG92 126 aa9.27□□□□□ -0.93
COL3A1-201ENST00000304636 LINC00482Q8N8I6 264 aa9.27□□□□□ -0.93
COL3A1-201ENST00000304636 DEFB131BA0A096LNP1 70 aa9.27□□□□□ -0.93
COL3A1-201ENST00000304636 FAM19A5Q7Z5A7 132 aaPredicted RBP9.27□□□□□ -0.93
COL3A1-201ENST00000304636 SRCAPQ6ZRS2 3230 aa9.25□□□□□ -0.93
COL3A1-201ENST00000304636 WFDC10AQ9H1F0 79 aa9.25□□□□□ -0.93
COL3A1-201ENST00000304636 CYSRT1A8MQ03 144 aa9.25□□□□□ -0.93
COL3A1-201ENST00000304636 PRR15LQ9BU68 103 aa9.25□□□□□ -0.93
COL3A1-201ENST00000304636 TTC28Q96AY4 2481 aa9.25□□□□□ -0.93
COL3A1-201ENST00000304636 KIF25-AS1Q9Y6Z4 181 aa9.24□□□□□ -0.93
COL3A1-201ENST00000304636 BEAN1Q3B7T3 259 aa9.24□□□□□ -0.93
COL3A1-201ENST00000304636 ODF3L2Q3SX64 289 aa9.24□□□□□ -0.93
COL3A1-201ENST00000304636 WFDC13Q8IUB5 93 aa9.23□□□□□ -0.93
COL3A1-201ENST00000304636 PRO0461Q9UI25 63 aa9.23□□□□□ -0.93
COL3A1-201ENST00000304636 ACACBO00763 2458 aa9.23□□□□□ -0.93
COL3A1-201ENST00000304636 SMCPP49901 116 aaPredicted RBP9.23□□□□□ -0.93
COL3A1-201ENST00000304636 FAM30AQ9NZY2 134 aa9.23□□□□□ -0.93
COL3A1-201ENST00000304636 KIR2DL5BQ8NHK3 375 aa9.22□□□□□ -0.93
COL3A1-201ENST00000304636 LINC01006Q8NI28 216 aa9.22□□□□□ -0.93
COL3A1-201ENST00000304636 IGLV4-60A0A075B6I1 120 aa9.21□□□□□ -0.93
COL3A1-201ENST00000304636 HILS1P60008 231 aa9.21□□□□□ -0.93
COL3A1-201ENST00000304636 CDSNQ15517 529 aa9.21□□□□□ -0.93
COL3A1-201ENST00000304636 MUC6Q6W4X9 2439 aa9.21□□□□□ -0.94
COL3A1-201ENST00000304636 UNQ6190/PRO20217Q6UXQ8 127 aa9.21□□□□□ -0.94
COL3A1-201ENST00000304636 CSPG4Q6UVK1 2322 aa9.21□□□□□ -0.94
COL3A1-201ENST00000304636 AVPP01185 164 aa9.21□□□□□ -0.94
COL3A1-201ENST00000304636 EXPH5Q8NEV8 1989 aa9.21□□□□□ -0.94
COL3A1-201ENST00000304636 Q6ZSN1 163 aa9.2□□□□□ -0.94
COL3A1-201ENST00000304636 LINC00846Q9NV44 126 aa9.2□□□□□ -0.94
COL3A1-201ENST00000304636 BDP1A6H8Y1 2624 aa9.2□□□□□ -0.94
COL3A1-201ENST00000304636 KPRPQ5T749 579 aaPredicted RBP9.2□□□□□ -0.94
COL3A1-201ENST00000304636 Q8N3U1 123 aa9.2□□□□□ -0.94
COL3A1-201ENST00000304636 TRBV10-3A0A0K0K1G6 114 aa9.19□□□□□ -0.94
COL3A1-201ENST00000304636 PRR3P79522 188 aaKnown RBP9.19□□□□□ -0.94
COL3A1-201ENST00000304636 EGFEM1PQ0D2K5 195 aa9.18□□□□□ -0.94
COL3A1-201ENST00000304636 C9orf116Q5BN46 136 aaPredicted RBP9.18□□□□□ -0.94
COL3A1-201ENST00000304636 HIVEP2P31629 2446 aa9.18□□□□□ -0.94
COL3A1-201ENST00000304636 PRYO14603 147 aa9.18□□□□□ -0.94
COL3A1-201ENST00000304636 LRCOL1A6NCL2 159 aa9.18□□□□□ -0.94
COL3A1-201ENST00000304636 CELA1Q9UNI1 258 aa9.18□□□□□ -0.94
COL3A1-201ENST00000304636 C2CD3Q4AC94 2353 aa9.18□□□□□ -0.94
COL3A1-201ENST00000304636 LOC107984640A0A0U1RRK4 108 aa9.17□□□□□ -0.94
COL3A1-201ENST00000304636 ZNF843Q8N446 348 aa9.17□□□□□ -0.94
COL3A1-201ENST00000304636 RPL37AP8A6NKH3 93 aa9.17□□□□□ -0.94
COL3A1-201ENST00000304636 FHL2Q14192 279 aa9.17□□□□□ -0.94
COL3A1-201ENST00000304636 Q8N9L7 120 aa9.17□□□□□ -0.94
COL3A1-201ENST00000304636 IGLV5-39A0A0G2JS06 123 aa9.16□□□□□ -0.94
COL3A1-201ENST00000304636 LINC00337Q8N6G1 96 aa9.16□□□□□ -0.94
COL3A1-201ENST00000304636 SBSPONQ8IVN8 264 aa9.16□□□□□ -0.94
COL3A1-201ENST00000304636 LINC00315P59091 139 aa9.15□□□□□ -0.94
COL3A1-201ENST00000304636 LINC01561Q8N1V8 128 aa9.15□□□□□ -0.94
COL3A1-201ENST00000304636 SOSTDC1Q6X4U4 206 aa9.15□□□□□ -0.94
COL3A1-201ENST00000304636 TRAV10A0A0B4J240 114 aa9.15□□□□□ -0.95
COL3A1-201ENST00000304636 A0A1B0GUV1 79 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 C1orf137Q5JT78 98 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 LINC00575Q6W349 94 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 Q6ZVQ6 151 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 PPDPFQ9H3Y8 114 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 SORL1Q92673 2214 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.14□□□□□ -0.95
COL3A1-201ENST00000304636 OTOGLQ3ZCN5 2332 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 CRYGAP11844 174 aa9.14□□□□□ -0.95
COL3A1-201ENST00000304636 RAI1Q7Z5J4 1906 aaPredicted RBP9.13□□□□□ -0.95
COL3A1-201ENST00000304636 SPINK6Q6UWN8 80 aa9.13□□□□□ -0.95
COL3A1-201ENST00000304636 FAM19A4Q96LR4 140 aa9.13□□□□□ -0.95
COL3A1-201ENST00000304636 IGHV4-30-4P0DP06 118 aa9.13□□□□□ -0.95
COL3A1-201ENST00000304636 TET2Q6N021 2002 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms