RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 TRBV6-5A0A0K0K1A5 114 aa9.7□□□□□ -0.86
CASC4-201ENST00000299957 ZNF702PQ9H963 129 aa9.7□□□□□ -0.86
CASC4-201ENST00000299957 IGHV4-31P0DP07 118 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 LINC00315P59091 139 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 SPATA25Q9BR10 227 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 KIF25-AS1Q9Y6Z4 181 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 RBMY1FQ15415 496 aaKnown RBP9.69□□□□□ -0.86
CASC4-201ENST00000299957 LINC00482Q8N8I6 264 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 ATP6V0E2Q8NHE4 81 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 IGSF10Q6WRI0 2623 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 DNAJC9-AS1A6NH13 148 aa9.69□□□□□ -0.86
CASC4-201ENST00000299957 CCDC179H3BU77 68 aa9.68□□□□□ -0.86
CASC4-201ENST00000299957 UBE2D4Q9Y2X8 147 aa9.68□□□□□ -0.86
CASC4-201ENST00000299957 NCR3O14931 201 aa9.67□□□□□ -0.86
CASC4-201ENST00000299957 Q6YL49 198 aa9.67□□□□□ -0.86
CASC4-201ENST00000299957 SDIM1Q6ZPB5 146 aa9.67□□□□□ -0.86
CASC4-201ENST00000299957 H7C423 109 aa9.67□□□□□ -0.86
CASC4-201ENST00000299957 UBE2D3P61077 147 aa9.67□□□□□ -0.86
CASC4-201ENST00000299957 UBE2D2P62837 147 aa9.67□□□□□ -0.86
CASC4-201ENST00000299957 DPH3Q96FX2 82 aa9.67□□□□□ -0.86
CASC4-201ENST00000299957 PRORYQ9H606 182 aa9.66□□□□□ -0.86
CASC4-201ENST00000299957 DNAJC30Q96LL9 226 aa9.66□□□□□ -0.86
CASC4-201ENST00000299957 H3BT86 120 aa9.65□□□□□ -0.86
CASC4-201ENST00000299957 FBN2P35556 2912 aa9.65□□□□□ -0.86
CASC4-201ENST00000299957 TRAV25A0A0B4J276 109 aa9.65□□□□□ -0.86
CASC4-201ENST00000299957 UNC79Q9P2D8 2635 aa9.65□□□□□ -0.86
CASC4-201ENST00000299957 ODF3L2Q3SX64 289 aa9.65□□□□□ -0.86
CASC4-201ENST00000299957 CDIP1Q9H305 208 aa9.65□□□□□ -0.86
CASC4-201ENST00000299957 NOTCH1P46531 2555 aa9.65□□□□□ -0.87
CASC4-201ENST00000299957 LINC00242Q5T6M2 205 aa9.64□□□□□ -0.87
CASC4-201ENST00000299957 C4orf3Q8WVX3 66 aa9.64□□□□□ -0.87
CASC4-201ENST00000299957 TMEM89A2RUT3 159 aa9.64□□□□□ -0.87
CASC4-201ENST00000299957 A0A1B0GX51 115 aa9.64□□□□□ -0.87
CASC4-201ENST00000299957 PRR3P79522 188 aaKnown RBP9.64□□□□□ -0.87
CASC4-201ENST00000299957 KLK12Q9UKR0 248 aa9.64□□□□□ -0.87
CASC4-201ENST00000299957 TRBV30A0A0K0K1B3 111 aa9.63□□□□□ -0.87
CASC4-201ENST00000299957 LINC00269Q8N2A0 174 aa9.63□□□□□ -0.87
CASC4-201ENST00000299957 MRPS36P82909 103 aaKnown RBP9.63□□□□□ -0.87
CASC4-201ENST00000299957 PRO0461Q9UI25 63 aa9.63□□□□□ -0.87
CASC4-201ENST00000299957 COX7A2LO14548 114 aa9.63□□□□□ -0.87
CASC4-201ENST00000299957 CELSR1Q9NYQ6 3014 aa9.63□□□□□ -0.87
CASC4-201ENST00000299957 DEFB105AQ8NG35 78 aa9.62□□□□□ -0.87
CASC4-201ENST00000299957 CELSR2Q9HCU4 2923 aa9.62□□□□□ -0.87
CASC4-201ENST00000299957 HERV-K104P63124 156 aa9.62□□□□□ -0.87
CASC4-201ENST00000299957 C16orf74Q96GX8 76 aa9.62□□□□□ -0.87
CASC4-201ENST00000299957 ODF3Q96PU9 254 aa9.62□□□□□ -0.87
CASC4-201ENST00000299957 CHCHD7Q9BUK0 85 aa9.62□□□□□ -0.87
CASC4-201ENST00000299957 SMR3AQ99954 134 aa9.61□□□□□ -0.87
CASC4-201ENST00000299957 ZNF561-AS1K7EIQ3 104 aa9.61□□□□□ -0.87
CASC4-201ENST00000299957 ZNF575Q86XF7 245 aa9.61□□□□□ -0.87
CASC4-201ENST00000299957 XAGE1AQ9HD64 81 aa9.6□□□□□ -0.87
CASC4-201ENST00000299957 ORMDL1Q9P0S3 153 aa9.6□□□□□ -0.87
CASC4-201ENST00000299957 CMC4P56277 68 aaPredicted RBP9.6□□□□□ -0.87
CASC4-201ENST00000299957 PYGO1Q9Y3Y4 419 aa9.6□□□□□ -0.87
CASC4-201ENST00000299957 LST1O00453 97 aa9.6□□□□□ -0.87
CASC4-201ENST00000299957 NDUFA1O15239 70 aa9.6□□□□□ -0.87
CASC4-201ENST00000299957 EIF4EBP3O60516 100 aaPredicted RBP9.6□□□□□ -0.87
CASC4-201ENST00000299957 TMEM126AQ9H061 195 aa9.6□□□□□ -0.87
CASC4-201ENST00000299957 FAM222AQ5U5X8 452 aa9.59□□□□□ -0.87
CASC4-201ENST00000299957 SPENQ96T58 3664 aaKnown RBP9.59□□□□□ -0.87
CASC4-201ENST00000299957 RPL32P62910 135 aaKnown RBP9.59□□□□□ -0.87
CASC4-201ENST00000299957 IGLV4-60A0A075B6I1 120 aa9.59□□□□□ -0.87
CASC4-201ENST00000299957 RPL18AQ02543 176 aaKnown RBP9.59□□□□□ -0.87
CASC4-201ENST00000299957 UBL5Q9BZL1 73 aa9.59□□□□□ -0.87
CASC4-201ENST00000299957 C1orf158Q8N1D5 194 aa9.58□□□□□ -0.88
CASC4-201ENST00000299957 Q8N2B8 174 aa9.58□□□□□ -0.88
CASC4-201ENST00000299957 WFDC9Q8NEX5 89 aa9.58□□□□□ -0.88
CASC4-201ENST00000299957 BBC3Q96PG8 261 aaPredicted RBP9.58□□□□□ -0.88
CASC4-201ENST00000299957 TRAV23DV6A0A075B6W5 121 aa9.58□□□□□ -0.88
CASC4-201ENST00000299957 DEFB121Q5J5C9 76 aa9.58□□□□□ -0.88
CASC4-201ENST00000299957 IGHV4-28A0A0C4DH34 117 aa9.58□□□□□ -0.88
CASC4-201ENST00000299957 C9orf116Q5BN46 136 aaPredicted RBP9.58□□□□□ -0.88
CASC4-201ENST00000299957 TRBV10-1A0A0K0K1A3 114 aa9.57□□□□□ -0.88
CASC4-201ENST00000299957 PRB2P02812 416 aaPredicted RBP9.57□□□□□ -0.88
CASC4-201ENST00000299957 HIGD2BQ4VC39 106 aa9.57□□□□□ -0.88
CASC4-201ENST00000299957 RNF152Q8N8N0 203 aa9.57□□□□□ -0.88
CASC4-201ENST00000299957 SPANXCQ9NY87 97 aa9.57□□□□□ -0.88
CASC4-201ENST00000299957 SMIM1B2RUZ4 78 aa9.57□□□□□ -0.88
CASC4-201ENST00000299957 SCXQ7RTU7 201 aa9.56□□□□□ -0.88
CASC4-201ENST00000299957 OVOL2Q9BRP0 275 aa9.56□□□□□ -0.88
CASC4-201ENST00000299957 HRNRQ86YZ3 2850 aaPredicted RBP9.56□□□□□ -0.88
CASC4-201ENST00000299957 TIRAPP58753 221 aa9.56□□□□□ -0.88
CASC4-201ENST00000299957 FHL3Q13643 280 aa9.56□□□□□ -0.88
CASC4-201ENST00000299957 CDC42SE2Q9NRR3 84 aa9.56□□□□□ -0.88
CASC4-201ENST00000299957 TRBV6-8A0A0A6YYG3 113 aa9.55□□□□□ -0.88
CASC4-201ENST00000299957 LINC01006Q8NI28 216 aa9.55□□□□□ -0.88
CASC4-201ENST00000299957 SMIM11BQ8TCY0 68 aa9.55□□□□□ -0.88
CASC4-201ENST00000299957 SETXQ7Z333 2677 aaKnown RBP9.55□□□□□ -0.88
CASC4-201ENST00000299957 A0A087WVE0 104 aa9.55□□□□□ -0.88
CASC4-201ENST00000299957 MRAPQ8TCY5 172 aa9.55□□□□□ -0.88
CASC4-201ENST00000299957 IGKV2D-24A0A075B6R9 120 aa9.55□□□□□ -0.88
CASC4-201ENST00000299957 AMELXQ99217 191 aa9.55□□□□□ -0.88
CASC4-201ENST00000299957 LINC01546A6NGU7 62 aa9.54□□□□□ -0.88
CASC4-201ENST00000299957 SPAG11BQ08648 103 aa9.54□□□□□ -0.88
CASC4-201ENST00000299957 CCL18P55774 89 aa9.54□□□□□ -0.88
CASC4-201ENST00000299957 SPANXDQ9BXN6 97 aa9.53□□□□□ -0.88
CASC4-201ENST00000299957 hADV29S1A0JD25 119 aa9.53□□□□□ -0.88
CASC4-201ENST00000299957 H0YGX0 51 aa9.53□□□□□ -0.88
CASC4-201ENST00000299957 DSCR8Q96T75 97 aa9.53□□□□□ -0.88
CASC4-201ENST00000299957 A8MTW9 85 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms