RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 Q9H8V8 135 aa16.85■□□□□ 0.29
TRIM54-201ENST00000296098 H7C2G1 150 aa16.84■□□□□ 0.29
TRIM54-201ENST00000296098 SCGB1C2P0DMR2 95 aa16.84■□□□□ 0.29
TRIM54-201ENST00000296098 CITED1Q99966 193 aa16.84■□□□□ 0.29
TRIM54-201ENST00000296098 SH2D6Q7Z4S9 175 aa16.84■□□□□ 0.29
TRIM54-201ENST00000296098 NPC2P61916 151 aa16.83■□□□□ 0.28
TRIM54-201ENST00000296098 Q1RN00 199 aa16.83■□□□□ 0.28
TRIM54-201ENST00000296098 FN1P02751 2386 aaKnown RBP16.83■□□□□ 0.28
TRIM54-201ENST00000296098 IFITM1P13164 125 aa16.82■□□□□ 0.28
TRIM54-201ENST00000296098 CIRBPQ14011 172 aaKnown RBP16.82■□□□□ 0.28
TRIM54-201ENST00000296098 CHCHD5Q9BSY4 110 aa16.82■□□□□ 0.28
TRIM54-201ENST00000296098 RNF183Q96D59 192 aa16.81■□□□□ 0.28
TRIM54-201ENST00000296098 SMCPP49901 116 aaPredicted RBP16.8■□□□□ 0.28
TRIM54-201ENST00000296098 DAND5Q8N907 189 aa16.8■□□□□ 0.28
TRIM54-201ENST00000296098 GYPEP15421 78 aa16.79■□□□□ 0.28
TRIM54-201ENST00000296098 APOC4P55056 127 aa16.79■□□□□ 0.28
TRIM54-201ENST00000296098 IGLV4-60A0A075B6I1 120 aa16.79■□□□□ 0.28
TRIM54-201ENST00000296098 DEFB135Q30KP9 77 aa16.79■□□□□ 0.28
TRIM54-201ENST00000296098 ZNF625Q96I27 306 aaPredicted RBP16.79■□□□□ 0.28
TRIM54-201ENST00000296098 LYRM9A8MSI8 78 aa16.78■□□□□ 0.28
TRIM54-201ENST00000296098 FAM222AQ5U5X8 452 aa16.78■□□□□ 0.28
TRIM54-201ENST00000296098 ATP6V0E2Q8NHE4 81 aa16.78■□□□□ 0.28
TRIM54-201ENST00000296098 J3QR89 54 aa16.77■□□□□ 0.28
TRIM54-201ENST00000296098 PRIMA1Q86XR5 153 aa16.77■□□□□ 0.28
TRIM54-201ENST00000296098 PRO0255Q9UI72 69 aa16.77■□□□□ 0.27
TRIM54-201ENST00000296098 IGKV3OR2-268A0A0C4DH90 116 aa16.75■□□□□ 0.27
TRIM54-201ENST00000296098 PCP4P48539 62 aa16.75■□□□□ 0.27
TRIM54-201ENST00000296098 VWFP04275 2813 aa16.75■□□□□ 0.27
TRIM54-201ENST00000296098 HERV-K104P63124 156 aa16.75■□□□□ 0.27
TRIM54-201ENST00000296098 TRBV30A0A0K0K1B3 111 aa16.74■□□□□ 0.27
TRIM54-201ENST00000296098 MEIG1Q5JSS6 88 aa16.74■□□□□ 0.27
TRIM54-201ENST00000296098 LINC00308Q8TCZ7 52 aa16.74■□□□□ 0.27
TRIM54-201ENST00000296098 TRIAP1O43715 76 aa16.73■□□□□ 0.27
TRIM54-201ENST00000296098 ICOSQ9Y6W8 199 aa16.72■□□□□ 0.27
TRIM54-201ENST00000296098 HIVEP1P15822 2718 aa16.72■□□□□ 0.27
TRIM54-201ENST00000296098 COPS9Q8WXC6 57 aa16.72■□□□□ 0.27
TRIM54-201ENST00000296098 IGHV4-28A0A0C4DH34 117 aa16.71■□□□□ 0.27
TRIM54-201ENST00000296098 A0A0U1RRA0 63 aa16.71■□□□□ 0.27
TRIM54-201ENST00000296098 DEFB4AO15263 64 aa16.7■□□□□ 0.26
TRIM54-201ENST00000296098 COX7B2Q8TF08 81 aa16.7■□□□□ 0.26
TRIM54-201ENST00000296098 PAX4O43316 350 aa16.7■□□□□ 0.26
TRIM54-201ENST00000296098 ATXN8Q156A1 80 aa16.7■□□□□ 0.26
TRIM54-201ENST00000296098 TENM1Q9UKZ4 2725 aa16.69■□□□□ 0.26
TRIM54-201ENST00000296098 RPL13AP40429 203 aaKnown RBP16.69■□□□□ 0.26
TRIM54-201ENST00000296098 IGHV3OR16-9A0A0B4J2B5 98 aa16.69■□□□□ 0.26
TRIM54-201ENST00000296098 WFDC9Q8NEX5 89 aa16.69■□□□□ 0.26
TRIM54-201ENST00000296098 TEN1Q86WV5 123 aa16.67■□□□□ 0.26
TRIM54-201ENST00000296098 DAD1P61803 113 aa16.67■□□□□ 0.26
TRIM54-201ENST00000296098 FOXI1Q12951 378 aa16.67■□□□□ 0.26
TRIM54-201ENST00000296098 LINC00959A0A1B0GUT2 108 aa16.66■□□□□ 0.26
TRIM54-201ENST00000296098 C9JAW5 83 aa16.66■□□□□ 0.26
TRIM54-201ENST00000296098 TMEM262E9PQX1 116 aa16.66■□□□□ 0.26
TRIM54-201ENST00000296098 WIPF1O43516 503 aa16.66■□□□□ 0.26
TRIM54-201ENST00000296098 SOSTDC1Q6X4U4 206 aa16.66■□□□□ 0.26
TRIM54-201ENST00000296098 A0A096LPF7 62 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 A0A1B0GUV1 79 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 SLC25A20O43772 301 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 MIFP14174 115 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 Q8NAQ8 132 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 TOMM7Q9P0U1 55 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 A0A087WZ39 114 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 COX6CP09669 75 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 C21orf62-AS1Q17RA5 79 aa16.65■□□□□ 0.26
TRIM54-201ENST00000296098 M0QXV9 152 aa16.63■□□□□ 0.25
TRIM54-201ENST00000296098 LINC01620Q4KN68 170 aa16.63■□□□□ 0.25
TRIM54-201ENST00000296098 PPDPFQ9H3Y8 114 aa16.63■□□□□ 0.25
TRIM54-201ENST00000296098 PPDPFLQ8WWR9 84 aa16.62■□□□□ 0.25
TRIM54-201ENST00000296098 CELA1Q9UNI1 258 aa16.62■□□□□ 0.25
TRIM54-201ENST00000296098 IGHV4-30-4P0DP06 118 aa16.62■□□□□ 0.25
TRIM54-201ENST00000296098 ANKRD29Q8N6D5 301 aa16.62■□□□□ 0.25
TRIM54-201ENST00000296098 C5orf38Q86SI9 138 aa16.61■□□□□ 0.25
TRIM54-201ENST00000296098 ATP5G1P05496 136 aa16.6■□□□□ 0.25
TRIM54-201ENST00000296098 TEP1Q99973 2627 aaKnown RBP16.6■□□□□ 0.25
TRIM54-201ENST00000296098 SS18Q15532 418 aa16.6■□□□□ 0.25
TRIM54-201ENST00000296098 ATRQ13535 2644 aa16.59■□□□□ 0.25
TRIM54-201ENST00000296098 GAGE12HA6NDE8 117 aa16.58■□□□□ 0.25
TRIM54-201ENST00000296098 CARD19Q96LW7 228 aa16.58■□□□□ 0.25
TRIM54-201ENST00000296098 NBEAL2Q6ZNJ1 2754 aa16.58■□□□□ 0.24
TRIM54-201ENST00000296098 SPATA25Q9BR10 227 aa16.58■□□□□ 0.24
TRIM54-201ENST00000296098 SPART-AS1P0CW21 52 aa16.57■□□□□ 0.24
TRIM54-201ENST00000296098 XCL1P47992 114 aa16.57■□□□□ 0.24
TRIM54-201ENST00000296098 TRAV26-1A0A087WT03 109 aa16.57■□□□□ 0.24
TRIM54-201ENST00000296098 CLPSL2Q6UWE3 100 aa16.57■□□□□ 0.24
TRIM54-201ENST00000296098 CLEC2BQ92478 149 aa16.56■□□□□ 0.24
TRIM54-201ENST00000296098 TRBV10-2A0A0K0K1G8 114 aa16.55■□□□□ 0.24
TRIM54-201ENST00000296098 MIR7-3HGQ8N6C7 128 aa16.55■□□□□ 0.24
TRIM54-201ENST00000296098 LST1O00453 97 aa16.54■□□□□ 0.24
TRIM54-201ENST00000296098 LINC01600Q96MT4 127 aa16.54■□□□□ 0.24
TRIM54-201ENST00000296098 IBA57-AS1B1ANH7 110 aa16.53■□□□□ 0.24
TRIM54-201ENST00000296098 LINC00158P58513 81 aa16.52■□□□□ 0.24
TRIM54-201ENST00000296098 HTN3P15516 51 aa16.51■□□□□ 0.23
TRIM54-201ENST00000296098 SHISA2Q6UWI4 295 aa16.51■□□□□ 0.23
TRIM54-201ENST00000296098 LINC01561Q8N1V8 128 aa16.5■□□□□ 0.23
TRIM54-201ENST00000296098 LINC00269Q8N2A0 174 aa16.5■□□□□ 0.23
TRIM54-201ENST00000296098 SIGMAR1Q99720 223 aa16.5■□□□□ 0.23
TRIM54-201ENST00000296098 MRPL23Q16540 153 aaKnown RBP16.5■□□□□ 0.23
TRIM54-201ENST00000296098 C6orf226Q5I0X4 101 aa16.5■□□□□ 0.23
TRIM54-201ENST00000296098 C11orf68Q9H3H3 251 aaKnown RBP16.49■□□□□ 0.23
TRIM54-201ENST00000296098 Q8IZM0 81 aa16.48■□□□□ 0.23
TRIM54-201ENST00000296098 COX7A2LO14548 114 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms