RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 IGLV5-39A0A0G2JS06 123 aa12.96□□□□□ -0.33
SHKBP1-201ENST00000291842 GAGE12HA6NDE8 117 aa12.96□□□□□ -0.33
SHKBP1-201ENST00000291842 GAGE6Q13070 117 aa12.96□□□□□ -0.33
SHKBP1-201ENST00000291842 FHL2Q14192 279 aa12.96□□□□□ -0.33
SHKBP1-201ENST00000291842 LINC00482Q8N8I6 264 aa12.96□□□□□ -0.33
SHKBP1-201ENST00000291842 TRIAP1O43715 76 aa12.95□□□□□ -0.34
SHKBP1-201ENST00000291842 CRLF1O75462 422 aa12.95□□□□□ -0.34
SHKBP1-201ENST00000291842 C9JAW5 83 aa12.95□□□□□ -0.34
SHKBP1-201ENST00000291842 TENM1Q9UKZ4 2725 aa12.93□□□□□ -0.34
SHKBP1-201ENST00000291842 INAFM1C9JVW0 142 aa12.93□□□□□ -0.34
SHKBP1-201ENST00000291842 F5H768 121 aa12.93□□□□□ -0.34
SHKBP1-201ENST00000291842 FAM19A3Q7Z5A8 133 aa12.93□□□□□ -0.34
SHKBP1-201ENST00000291842 CARD19Q96LW7 228 aa12.93□□□□□ -0.34
SHKBP1-201ENST00000291842 IGLV4-60A0A075B6I1 120 aa12.92□□□□□ -0.34
SHKBP1-201ENST00000291842 TIMM17BO60830 172 aa12.92□□□□□ -0.34
SHKBP1-201ENST00000291842 CIRBPQ14011 172 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-201ENST00000291842 TEN1Q86WV5 123 aa12.92□□□□□ -0.34
SHKBP1-201ENST00000291842 PRIMA1Q86XR5 153 aa12.92□□□□□ -0.34
SHKBP1-201ENST00000291842 ANKRD29Q8N6D5 301 aa12.92□□□□□ -0.34
SHKBP1-201ENST00000291842 SLC25A20O43772 301 aa12.91□□□□□ -0.34
SHKBP1-201ENST00000291842 CIDEAO60543 219 aa12.91□□□□□ -0.34
SHKBP1-201ENST00000291842 ATP6V0E2Q8NHE4 81 aa12.91□□□□□ -0.34
SHKBP1-201ENST00000291842 ICOSQ9Y6W8 199 aa12.91□□□□□ -0.34
SHKBP1-201ENST00000291842 CHCHD5Q9BSY4 110 aa12.91□□□□□ -0.34
SHKBP1-201ENST00000291842 TRBV30A0A0K0K1B3 111 aa12.9□□□□□ -0.34
SHKBP1-201ENST00000291842 SMAGPQ0VAQ4 97 aa12.9□□□□□ -0.34
SHKBP1-201ENST00000291842 TRBV6-8A0A0A6YYG3 113 aa12.89□□□□□ -0.35
SHKBP1-201ENST00000291842 MEIG1Q5JSS6 88 aa12.89□□□□□ -0.35
SHKBP1-201ENST00000291842 LINC00308Q8TCZ7 52 aa12.89□□□□□ -0.35
SHKBP1-201ENST00000291842 SIGMAR1Q99720 223 aa12.89□□□□□ -0.35
SHKBP1-201ENST00000291842 RPL13AP40429 203 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-201ENST00000291842 IFITM1P13164 125 aa12.88□□□□□ -0.35
SHKBP1-201ENST00000291842 ATXN8Q156A1 80 aa12.88□□□□□ -0.35
SHKBP1-201ENST00000291842 SPATA25Q9BR10 227 aa12.88□□□□□ -0.35
SHKBP1-201ENST00000291842 NSD1Q96L73 2696 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-201ENST00000291842 PPDPFLQ8WWR9 84 aa12.88□□□□□ -0.35
SHKBP1-201ENST00000291842 SOSTDC1Q6X4U4 206 aa12.87□□□□□ -0.35
SHKBP1-201ENST00000291842 CLEC2BQ92478 149 aa12.87□□□□□ -0.35
SHKBP1-201ENST00000291842 LINC01620Q4KN68 170 aa12.87□□□□□ -0.35
SHKBP1-201ENST00000291842 A0A096LPF7 62 aa12.86□□□□□ -0.35
SHKBP1-201ENST00000291842 DEFB4AO15263 64 aa12.86□□□□□ -0.35
SHKBP1-201ENST00000291842 CFAP161Q6P656 301 aa12.86□□□□□ -0.35
SHKBP1-201ENST00000291842 TOMM7Q9P0U1 55 aa12.86□□□□□ -0.35
SHKBP1-201ENST00000291842 X6R8D5 127 aa12.86□□□□□ -0.35
SHKBP1-201ENST00000291842 GYPEP15421 78 aa12.85□□□□□ -0.35
SHKBP1-201ENST00000291842 H7C423 109 aa12.85□□□□□ -0.35
SHKBP1-201ENST00000291842 KIR2DL5BQ8NHK3 375 aa12.84□□□□□ -0.35
SHKBP1-201ENST00000291842 RNF183Q96D59 192 aa12.84□□□□□ -0.35
SHKBP1-201ENST00000291842 ATRQ13535 2644 aa12.83□□□□□ -0.36
SHKBP1-201ENST00000291842 COX6CP09669 75 aa12.83□□□□□ -0.36
SHKBP1-201ENST00000291842 DEFB135Q30KP9 77 aa12.83□□□□□ -0.36
SHKBP1-201ENST00000291842 CDIP1Q9H305 208 aa12.83□□□□□ -0.36
SHKBP1-201ENST00000291842 HIVEP1P15822 2718 aa12.82□□□□□ -0.36
SHKBP1-201ENST00000291842 TMEM262E9PQX1 116 aa12.81□□□□□ -0.36
SHKBP1-201ENST00000291842 FAM222AQ5U5X8 452 aa12.81□□□□□ -0.36
SHKBP1-201ENST00000291842 C5orf38Q86SI9 138 aa12.81□□□□□ -0.36
SHKBP1-201ENST00000291842 COX7B2Q8TF08 81 aa12.81□□□□□ -0.36
SHKBP1-201ENST00000291842 NTN5Q8WTR8 489 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-201ENST00000291842 LINC00612Q8N6U2 182 aa12.81□□□□□ -0.36
SHKBP1-201ENST00000291842 C9orf66Q5T8R8 295 aa12.8□□□□□ -0.36
SHKBP1-201ENST00000291842 HERV-K104P63124 156 aa12.8□□□□□ -0.36
SHKBP1-201ENST00000291842 IGHV3OR16-9A0A0B4J2B5 98 aa12.79□□□□□ -0.36
SHKBP1-201ENST00000291842 CLPSL2Q6UWE3 100 aa12.79□□□□□ -0.36
SHKBP1-201ENST00000291842 TRRAPQ9Y4A5 3859 aa12.79□□□□□ -0.36
SHKBP1-201ENST00000291842 TRBV10-2A0A0K0K1G8 114 aa12.79□□□□□ -0.36
SHKBP1-201ENST00000291842 TEX49A0A1B0GTD5 131 aa12.78□□□□□ -0.36
SHKBP1-201ENST00000291842 C2orf82Q6UX34 121 aa12.77□□□□□ -0.36
SHKBP1-201ENST00000291842 LINC00959A0A1B0GUT2 108 aa12.77□□□□□ -0.37
SHKBP1-201ENST00000291842 C11orf68Q9H3H3 251 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-201ENST00000291842 PRO0255Q9UI72 69 aa12.77□□□□□ -0.37
SHKBP1-201ENST00000291842 TEP1Q99973 2627 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-201ENST00000291842 MIR7-3HGQ8N6C7 128 aa12.76□□□□□ -0.37
SHKBP1-201ENST00000291842 SMIM9A6NGZ8 99 aa12.76□□□□□ -0.37
SHKBP1-201ENST00000291842 M0QXV9 152 aa12.76□□□□□ -0.37
SHKBP1-201ENST00000291842 LST1O00453 97 aa12.76□□□□□ -0.37
SHKBP1-201ENST00000291842 XCL1P47992 114 aa12.76□□□□□ -0.37
SHKBP1-201ENST00000291842 PAX4O43316 350 aa12.75□□□□□ -0.37
SHKBP1-201ENST00000291842 MT-ATP8P03928 68 aa12.74□□□□□ -0.37
SHKBP1-201ENST00000291842 XGP55808 180 aa12.74□□□□□ -0.37
SHKBP1-201ENST00000291842 COPS9Q8WXC6 57 aa12.74□□□□□ -0.37
SHKBP1-201ENST00000291842 A0A087WZ39 114 aa12.74□□□□□ -0.37
SHKBP1-201ENST00000291842 LINC00158P58513 81 aa12.74□□□□□ -0.37
SHKBP1-201ENST00000291842 IGHV4-28A0A0C4DH34 117 aa12.73□□□□□ -0.37
SHKBP1-201ENST00000291842 PFN2P35080 140 aa12.73□□□□□ -0.37
SHKBP1-201ENST00000291842 Q8N3U1 123 aa12.72□□□□□ -0.37
SHKBP1-201ENST00000291842 LYRM9A8MSI8 78 aa12.71□□□□□ -0.38
SHKBP1-201ENST00000291842 SHISA2Q6UWI4 295 aa12.71□□□□□ -0.38
SHKBP1-201ENST00000291842 UBE2WQ96B02 151 aa12.71□□□□□ -0.38
SHKBP1-201ENST00000291842 CELA1Q9UNI1 258 aa12.71□□□□□ -0.38
SHKBP1-201ENST00000291842 CITED1Q99966 193 aa12.7□□□□□ -0.38
SHKBP1-201ENST00000291842 SND1-IT1Q9HBX3 110 aa12.7□□□□□ -0.38
SHKBP1-201ENST00000291842 COX7A2LO14548 114 aa12.69□□□□□ -0.38
SHKBP1-201ENST00000291842 APOC4P55056 127 aa12.69□□□□□ -0.38
SHKBP1-201ENST00000291842 DAD1P61803 113 aa12.69□□□□□ -0.38
SHKBP1-201ENST00000291842 SS18Q15532 418 aa12.69□□□□□ -0.38
SHKBP1-201ENST00000291842 C6orf226Q5I0X4 101 aa12.69□□□□□ -0.38
SHKBP1-201ENST00000291842 A0A1B0GUV1 79 aa12.68□□□□□ -0.38
SHKBP1-201ENST00000291842 SCGB1A1P11684 91 aa12.68□□□□□ -0.38
SHKBP1-201ENST00000291842 LINC00337Q8N6G1 96 aa12.68□□□□□ -0.38
SHKBP1-201ENST00000291842 LINC01600Q96MT4 127 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms