RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 A8MZ25 164 aa10.78□□□□□ -0.68
SF3B4-201ENST00000271628 IGHV3-30-3P0DP02 117 aa10.78□□□□□ -0.68
SF3B4-201ENST00000271628 SFTA2Q6UW10 78 aa10.78□□□□□ -0.68
SF3B4-201ENST00000271628 TCL1BO95988 128 aa10.77□□□□□ -0.69
SF3B4-201ENST00000271628 LINC00694P0DN24 101 aa10.77□□□□□ -0.69
SF3B4-201ENST00000271628 RNASE13Q5GAN3 156 aaKnown RBP10.77□□□□□ -0.69
SF3B4-201ENST00000271628 Q8NAQ8 132 aa10.77□□□□□ -0.69
SF3B4-201ENST00000271628 IGHV3-64A0A075B6Q5 118 aa10.77□□□□□ -0.69
SF3B4-201ENST00000271628 SCGB1C2P0DMR2 95 aa10.77□□□□□ -0.69
SF3B4-201ENST00000271628 MUSTN1Q8IVN3 82 aa10.77□□□□□ -0.69
SF3B4-201ENST00000271628 TMEM101Q96IK0 257 aa10.77□□□□□ -0.69
SF3B4-201ENST00000271628 IGHV1-58A0A0C4DH39 117 aa10.76□□□□□ -0.69
SF3B4-201ENST00000271628 A0A0J9YXY3 114 aa10.76□□□□□ -0.69
SF3B4-201ENST00000271628 KRTAP10-11P60412 298 aa10.76□□□□□ -0.69
SF3B4-201ENST00000271628 TRBV6-8A0A0A6YYG3 113 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 IGHV3-33P01772 117 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 SPART-AS1P0CW21 52 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 DAD1P61803 113 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 ERG28Q9UKR5 140 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 TIRAPP58753 221 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 TEN1Q86WV5 123 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 GEMIN7Q9H840 131 aaKnown RBP10.75□□□□□ -0.69
SF3B4-201ENST00000271628 CDC42SE2Q9NRR3 84 aa10.75□□□□□ -0.69
SF3B4-201ENST00000271628 DEFB4AO15263 64 aa10.74□□□□□ -0.69
SF3B4-201ENST00000271628 GYPEP15421 78 aa10.74□□□□□ -0.69
SF3B4-201ENST00000271628 FAM19A3Q7Z5A8 133 aa10.74□□□□□ -0.69
SF3B4-201ENST00000271628 CMYA5Q8N3K9 4069 aa10.74□□□□□ -0.69
SF3B4-201ENST00000271628 PPDPFLQ8WWR9 84 aa10.73□□□□□ -0.69
SF3B4-201ENST00000271628 M0QXV9 152 aa10.73□□□□□ -0.69
SF3B4-201ENST00000271628 HERVK_113P63121 156 aa10.73□□□□□ -0.69
SF3B4-201ENST00000271628 VSIG2Q96IQ7 327 aa10.73□□□□□ -0.69
SF3B4-201ENST00000271628 PAX4O43316 350 aa10.72□□□□□ -0.69
SF3B4-201ENST00000271628 ATP5G1P05496 136 aa10.72□□□□□ -0.69
SF3B4-201ENST00000271628 SPANXDQ9BXN6 97 aa10.72□□□□□ -0.69
SF3B4-201ENST00000271628 SPANXCQ9NY87 97 aa10.72□□□□□ -0.69
SF3B4-201ENST00000271628 EIF4EBP3O60516 100 aaPredicted RBP10.72□□□□□ -0.69
SF3B4-201ENST00000271628 LITAFQ99732 161 aa10.72□□□□□ -0.69
SF3B4-201ENST00000271628 NDUFA12Q9UI09 145 aa10.72□□□□□ -0.69
SF3B4-201ENST00000271628 STAB1Q9NY15 2570 aa10.72□□□□□ -0.69
SF3B4-201ENST00000271628 IGLV5-45A0A087WSX0 123 aa10.71□□□□□ -0.69
SF3B4-201ENST00000271628 TRAV8-3A0A0A6YYJ7 113 aa10.71□□□□□ -0.69
SF3B4-201ENST00000271628 CHCHD5Q9BSY4 110 aa10.7□□□□□ -0.7
SF3B4-201ENST00000271628 PKD1L1Q8TDX9 2849 aa10.7□□□□□ -0.7
SF3B4-201ENST00000271628 LINC00242Q5T6M2 205 aa10.7□□□□□ -0.7
SF3B4-201ENST00000271628 CELA1Q9UNI1 258 aa10.69□□□□□ -0.7
SF3B4-201ENST00000271628 TRBV30A0A0K0K1B3 111 aa10.69□□□□□ -0.7
SF3B4-201ENST00000271628 TIMM17BO60830 172 aa10.69□□□□□ -0.7
SF3B4-201ENST00000271628 PRSS2P07478 247 aa10.69□□□□□ -0.7
SF3B4-201ENST00000271628 GAGE6Q13070 117 aa10.69□□□□□ -0.7
SF3B4-201ENST00000271628 ZFAND6Q6FIF0 208 aa10.69□□□□□ -0.7
SF3B4-201ENST00000271628 CDKN2A-AS1Q9UH64 79 aa10.69□□□□□ -0.7
SF3B4-201ENST00000271628 TRAV13-1A0A0B4J241 112 aa10.68□□□□□ -0.7
SF3B4-201ENST00000271628 SLC25A20O43772 301 aa10.68□□□□□ -0.7
SF3B4-201ENST00000271628 MIAQ16674 131 aa10.68□□□□□ -0.7
SF3B4-201ENST00000271628 CARD19Q96LW7 228 aa10.68□□□□□ -0.7
SF3B4-201ENST00000271628 ATXN8Q156A1 80 aa10.67□□□□□ -0.7
SF3B4-201ENST00000271628 Q1RN00 199 aa10.67□□□□□ -0.7
SF3B4-201ENST00000271628 MAST4O15021 2626 aa10.67□□□□□ -0.7
SF3B4-201ENST00000271628 H7C2G1 150 aa10.67□□□□□ -0.7
SF3B4-201ENST00000271628 SPINK8P0C7L1 97 aa10.67□□□□□ -0.7
SF3B4-201ENST00000271628 CDIP1Q9H305 208 aa10.67□□□□□ -0.7
SF3B4-201ENST00000271628 TRAV26-1A0A087WT03 109 aa10.66□□□□□ -0.7
SF3B4-201ENST00000271628 F5H768 121 aa10.66□□□□□ -0.7
SF3B4-201ENST00000271628 COX6A2Q02221 97 aa10.66□□□□□ -0.7
SF3B4-201ENST00000271628 ADAMTSL4-AS1Q5T5F5 129 aa10.66□□□□□ -0.7
SF3B4-201ENST00000271628 LINC01600Q96MT4 127 aa10.66□□□□□ -0.7
SF3B4-201ENST00000271628 C9JAW5 83 aa10.65□□□□□ -0.7
SF3B4-201ENST00000271628 IFITM1P13164 125 aa10.65□□□□□ -0.7
SF3B4-201ENST00000271628 ANK2Q01484 3957 aa10.65□□□□□ -0.7
SF3B4-201ENST00000271628 ANKRD29Q8N6D5 301 aa10.65□□□□□ -0.7
SF3B4-201ENST00000271628 A0A1B0GUV1 79 aa10.65□□□□□ -0.7
SF3B4-201ENST00000271628 TMEM262E9PQX1 116 aa10.64□□□□□ -0.71
SF3B4-201ENST00000271628 MRPL23Q16540 153 aaKnown RBP10.64□□□□□ -0.71
SF3B4-201ENST00000271628 DNAH3Q8TD57 4116 aa10.64□□□□□ -0.71
SF3B4-201ENST00000271628 IGLV4-60A0A075B6I1 120 aa10.64□□□□□ -0.71
SF3B4-201ENST00000271628 NDUFA1O15239 70 aa10.64□□□□□ -0.71
SF3B4-201ENST00000271628 COX6CP09669 75 aa10.63□□□□□ -0.71
SF3B4-201ENST00000271628 CIRBPQ14011 172 aaKnown RBP10.63□□□□□ -0.71
SF3B4-201ENST00000271628 LINC01620Q4KN68 170 aa10.63□□□□□ -0.71
SF3B4-201ENST00000271628 COL6A5A8TX70 2615 aa10.63□□□□□ -0.71
SF3B4-201ENST00000271628 A0A096LPF7 62 aa10.62□□□□□ -0.71
SF3B4-201ENST00000271628 IGLV5-39A0A0G2JS06 123 aa10.62□□□□□ -0.71
SF3B4-201ENST00000271628 TRIAP1O43715 76 aa10.62□□□□□ -0.71
SF3B4-201ENST00000271628 HTN3P15516 51 aa10.62□□□□□ -0.71
SF3B4-201ENST00000271628 C11orf68Q9H3H3 251 aaKnown RBP10.62□□□□□ -0.71
SF3B4-201ENST00000271628 ICOSQ9Y6W8 199 aa10.62□□□□□ -0.71
SF3B4-201ENST00000271628 TRBV10-2A0A0K0K1G8 114 aa10.61□□□□□ -0.71
SF3B4-201ENST00000271628 SMIM1B2RUZ4 78 aa10.61□□□□□ -0.71
SF3B4-201ENST00000271628 RETNQ9HD89 108 aa10.61□□□□□ -0.71
SF3B4-201ENST00000271628 A0A1B0GV72 72 aa10.6□□□□□ -0.71
SF3B4-201ENST00000271628 COPS9Q8WXC6 57 aa10.59□□□□□ -0.71
SF3B4-201ENST00000271628 IGKV3OR2-268A0A0C4DH90 116 aa10.58□□□□□ -0.72
SF3B4-201ENST00000271628 H3BNG1 76 aa10.58□□□□□ -0.72
SF3B4-201ENST00000271628 LINC00959A0A1B0GUT2 108 aa10.57□□□□□ -0.72
SF3B4-201ENST00000271628 RPL13AP40429 203 aaKnown RBP10.57□□□□□ -0.72
SF3B4-201ENST00000271628 XGP55808 180 aa10.57□□□□□ -0.72
SF3B4-201ENST00000271628 IGHV3OR16-9A0A0B4J2B5 98 aa10.56□□□□□ -0.72
SF3B4-201ENST00000271628 MT-ATP8P03928 68 aa10.56□□□□□ -0.72
SF3B4-201ENST00000271628 NPC2P61916 151 aa10.56□□□□□ -0.72
SF3B4-201ENST00000271628 SS18Q15532 418 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms