RNA–Protein interactions for RNA: ENST00000253193.8

LRP3-201, Transcript of LDL receptor related protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRP3, Length 3,807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP3-201ENST00000253193 PIK3CD-AS1Q5SR53 167 aa13.24□□□□□ -0.29
LRP3-201ENST00000253193 CITED1Q99966 193 aa13.24□□□□□ -0.29
LRP3-201ENST00000253193 A0A096LPF7 62 aa13.23□□□□□ -0.29
LRP3-201ENST00000253193 H7C423 109 aa13.23□□□□□ -0.29
LRP3-201ENST00000253193 PF4P02776 101 aa13.23□□□□□ -0.29
LRP3-201ENST00000253193 C5orf38Q86SI9 138 aa13.22□□□□□ -0.29
LRP3-201ENST00000253193 TRAV25A0A0B4J276 109 aa13.22□□□□□ -0.29
LRP3-201ENST00000253193 TRBV10-1A0A0K0K1A3 114 aa13.21□□□□□ -0.29
LRP3-201ENST00000253193 CCDC179H3BU77 68 aa13.2□□□□□ -0.3
LRP3-201ENST00000253193 CRPP02741 224 aa13.2□□□□□ -0.3
LRP3-201ENST00000253193 CLPSL2Q6UWE3 100 aa13.2□□□□□ -0.3
LRP3-201ENST00000253193 EDA2RQ9HAV5 297 aa13.2□□□□□ -0.3
LRP3-201ENST00000253193 Q8N2B8 174 aa13.2□□□□□ -0.3
LRP3-201ENST00000253193 NTM-AS1Q6ZSK4 140 aa13.2□□□□□ -0.3
LRP3-201ENST00000253193 SMIM1B2RUZ4 78 aa13.19□□□□□ -0.3
LRP3-201ENST00000253193 DNAL4O96015 105 aa13.19□□□□□ -0.3
LRP3-201ENST00000253193 PAX4O43316 350 aa13.19□□□□□ -0.3
LRP3-201ENST00000253193 ESM1Q9NQ30 184 aa13.18□□□□□ -0.3
LRP3-201ENST00000253193 NDUFV3P56181 108 aaKnown RBP13.18□□□□□ -0.3
LRP3-201ENST00000253193 CDC42SE2Q9NRR3 84 aa13.18□□□□□ -0.3
LRP3-201ENST00000253193 C16orf74Q96GX8 76 aa13.18□□□□□ -0.3
LRP3-201ENST00000253193 H3BT86 120 aa13.17□□□□□ -0.3
LRP3-201ENST00000253193 C6orf226Q5I0X4 101 aa13.17□□□□□ -0.3
LRP3-201ENST00000253193 LRRC75A-AS1Q8N1F1 130 aa13.17□□□□□ -0.3
LRP3-201ENST00000253193 MIR7-3HGQ8N6C7 128 aa13.17□□□□□ -0.3
LRP3-201ENST00000253193 LST1O00453 97 aa13.17□□□□□ -0.3
LRP3-201ENST00000253193 LINC01006Q8NI28 216 aa13.17□□□□□ -0.3
LRP3-201ENST00000253193 NBEAL2Q6ZNJ1 2754 aa13.16□□□□□ -0.3
LRP3-201ENST00000253193 CMC4P56277 68 aaPredicted RBP13.16□□□□□ -0.3
LRP3-201ENST00000253193 C3orf56Q8N813 242 aa13.16□□□□□ -0.3
LRP3-201ENST00000253193 A8MTW9 85 aa13.15□□□□□ -0.3
LRP3-201ENST00000253193 TIMM17BO60830 172 aa13.15□□□□□ -0.3
LRP3-201ENST00000253193 TMEM86BQ8N661 226 aa13.15□□□□□ -0.3
LRP3-201ENST00000253193 XCL1P47992 114 aa13.15□□□□□ -0.3
LRP3-201ENST00000253193 COX7B2Q8TF08 81 aa13.15□□□□□ -0.3
LRP3-201ENST00000253193 Q9HAA7 133 aa13.15□□□□□ -0.3
LRP3-201ENST00000253193 BAALC-AS2P0C853 105 aa13.14□□□□□ -0.31
LRP3-201ENST00000253193 SND1-IT1Q9HBX3 110 aa13.14□□□□□ -0.31
LRP3-201ENST00000253193 HERV-K104P63124 156 aa13.14□□□□□ -0.31
LRP3-201ENST00000253193 FASNP49327 2511 aaKnown RBP13.13□□□□□ -0.31
LRP3-201ENST00000253193 NIPBLQ6KC79 2804 aaeCLIP13.13□□□□□ -0.31
LRP3-201ENST00000253193 APCP25054 2843 aa13.12□□□□□ -0.31
LRP3-201ENST00000253193 GCN1Q92616 2671 aaKnown RBP13.12□□□□□ -0.31
LRP3-201ENST00000253193 COX7A2LO14548 114 aa13.12□□□□□ -0.31
LRP3-201ENST00000253193 HTN3P15516 51 aa13.11□□□□□ -0.31
LRP3-201ENST00000253193 GAGE2AQ6NT46 116 aa13.11□□□□□ -0.31
LRP3-201ENST00000253193 SOSTDC1Q6X4U4 206 aa13.11□□□□□ -0.31
LRP3-201ENST00000253193 DEFB4AO15263 64 aa13.1□□□□□ -0.31
LRP3-201ENST00000253193 IGLV4-60A0A075B6I1 120 aa13.1□□□□□ -0.31
LRP3-201ENST00000253193 GYPEP15421 78 aa13.1□□□□□ -0.31
LRP3-201ENST00000253193 IGLV5-39A0A0G2JS06 123 aa13.1□□□□□ -0.31
LRP3-201ENST00000253193 RNASE1P07998 156 aaKnown RBP13.09□□□□□ -0.31
LRP3-201ENST00000253193 IGLV5-45A0A087WSX0 123 aa13.09□□□□□ -0.31
LRP3-201ENST00000253193 TRAV13-2A0A0B4J235 113 aa13.09□□□□□ -0.31
LRP3-201ENST00000253193 CR1P17927 2039 aa13.09□□□□□ -0.31
LRP3-201ENST00000253193 TRBV6-8A0A0A6YYG3 113 aa13.07□□□□□ -0.32
LRP3-201ENST00000253193 M0QXV9 152 aa13.07□□□□□ -0.32
LRP3-201ENST00000253193 HECTD1Q9ULT8 2610 aa13.07□□□□□ -0.32
LRP3-201ENST00000253193 AKAP9Q99996 3911 aa13.07□□□□□ -0.32
LRP3-201ENST00000253193 TRBV6-4A0A1B0GX49 114 aa13.07□□□□□ -0.32
LRP3-201ENST00000253193 CSDC2Q9Y534 153 aaKnown RBP13.06□□□□□ -0.32
LRP3-201ENST00000253193 ATP5G1P05496 136 aa13.06□□□□□ -0.32
LRP3-201ENST00000253193 IGLV10-54A0A075B6I4 117 aa13.06□□□□□ -0.32
LRP3-201ENST00000253193 SS18Q15532 418 aa13.05□□□□□ -0.32
LRP3-201ENST00000253193 SVIPQ8NHG7 77 aa13.04□□□□□ -0.32
LRP3-201ENST00000253193 SETXQ7Z333 2677 aaKnown RBP13.04□□□□□ -0.32
LRP3-201ENST00000253193 MALP21145 153 aa13.03□□□□□ -0.32
LRP3-201ENST00000253193 SMR3AQ99954 134 aa13.03□□□□□ -0.32
LRP3-201ENST00000253193 IGLV1-51P01701 117 aa13.02□□□□□ -0.32
LRP3-201ENST00000253193 ITPR2Q14571 2701 aa13.02□□□□□ -0.32
LRP3-201ENST00000253193 HELZ2Q9BYK8 2649 aaKnown RBP13.02□□□□□ -0.33
LRP3-201ENST00000253193 F5H768 121 aa13.02□□□□□ -0.33
LRP3-201ENST00000253193 CFAP161Q6P656 301 aa13.02□□□□□ -0.33
LRP3-201ENST00000253193 GIG44P09565 113 aaPredicted RBP13.01□□□□□ -0.33
LRP3-201ENST00000253193 FHL2Q14192 279 aa13.01□□□□□ -0.33
LRP3-201ENST00000253193 SMIM20Q8N5G0 67 aa13.01□□□□□ -0.33
LRP3-201ENST00000253193 LINC00482Q8N8I6 264 aa13.01□□□□□ -0.33
LRP3-201ENST00000253193 KRTAP1-3Q8IUG1 177 aa13□□□□□ -0.33
LRP3-201ENST00000253193 LECT2O14960 151 aa12.99□□□□□ -0.33
LRP3-201ENST00000253193 ANGP03950 147 aaKnown RBP12.99□□□□□ -0.33
LRP3-201ENST00000253193 CCL18P55774 89 aa12.98□□□□□ -0.33
LRP3-201ENST00000253193 DEFB135Q30KP9 77 aa12.98□□□□□ -0.33
LRP3-201ENST00000253193 LINC00337Q8N6G1 96 aa12.98□□□□□ -0.33
LRP3-201ENST00000253193 FAM218AQ96MZ4 157 aa12.98□□□□□ -0.33
LRP3-201ENST00000253193 SLPIP03973 132 aa12.97□□□□□ -0.33
LRP3-201ENST00000253193 IL17DQ8TAD2 202 aa12.97□□□□□ -0.33
LRP3-201ENST00000253193 SMIM11BQ8TCY0 68 aa12.97□□□□□ -0.33
LRP3-201ENST00000253193 INAFM2P0DMQ5 153 aa12.97□□□□□ -0.33
LRP3-201ENST00000253193 LINC00959A0A1B0GUT2 108 aa12.97□□□□□ -0.33
LRP3-201ENST00000253193 FAM236AA0A1B0GUQ0 79 aa12.96□□□□□ -0.33
LRP3-201ENST00000253193 FAM236BA0A1B0GV22 79 aa12.96□□□□□ -0.33
LRP3-201ENST00000253193 TRACP01848 142 aa12.96□□□□□ -0.33
LRP3-201ENST00000253193 FAM222AQ5U5X8 452 aa12.96□□□□□ -0.34
LRP3-201ENST00000253193 SMCR5Q8TEV8 140 aa12.96□□□□□ -0.34
LRP3-201ENST00000253193 UBR5O95071 2799 aaPredicted RBP12.95□□□□□ -0.34
LRP3-201ENST00000253193 Q6Q795 121 aa12.95□□□□□ -0.34
LRP3-201ENST00000253193 SHISA2Q6UWI4 295 aa12.95□□□□□ -0.34
LRP3-201ENST00000253193 PLAC8L1A1L4L8 177 aa12.95□□□□□ -0.34
LRP3-201ENST00000253193 LINC01600Q96MT4 127 aa12.95□□□□□ -0.34
LRP3-201ENST00000253193 C14orf132Q9NPU4 83 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms