RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 PRR3P79522 188 aaKnown RBP3.34□□□□□ -1.87
VPS13C-201ENST00000249837 LINC00694P0DN24 101 aa3.34□□□□□ -1.87
VPS13C-201ENST00000249837 CR1P17927 2039 aa3.34□□□□□ -1.87
VPS13C-201ENST00000249837 RBM3P98179 157 aaKnown RBP3.34□□□□□ -1.87
VPS13C-201ENST00000249837 MGAQ8IWI9 3026 aa3.34□□□□□ -1.87
VPS13C-201ENST00000249837 CCL18P55774 89 aa3.34□□□□□ -1.87
VPS13C-201ENST00000249837 DEFB121Q5J5C9 76 aa3.34□□□□□ -1.87
VPS13C-201ENST00000249837 NKAPP1Q8N9T2 125 aa3.34□□□□□ -1.88
VPS13C-201ENST00000249837 TRIOO75962 3097 aa3.34□□□□□ -1.88
VPS13C-201ENST00000249837 hADV29S1A0JD25 119 aa3.34□□□□□ -1.88
VPS13C-201ENST00000249837 ODF3L2Q3SX64 289 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 CDC42SE2Q9NRR3 84 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 FAM222AQ5U5X8 452 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 CAMK2N2Q96S95 79 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 FLNCQ14315 2725 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 LINC00269Q8N2A0 174 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 LINC00482Q8N8I6 264 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 CHCHD10Q8WYQ3 142 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-201ENST00000249837 CHCHD7Q9BUK0 85 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 IGHV4-28A0A0C4DH34 117 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 HIGD2BQ4VC39 106 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 NBEAL1Q6ZS30 2694 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 TRBV6-8A0A0A6YYG3 113 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 SMIM11BQ8TCY0 68 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 AMELXQ99217 191 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 C3orf22Q8N5N4 141 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 LAMA3Q16787 3333 aa3.33□□□□□ -1.88
VPS13C-201ENST00000249837 RBMY1FQ15415 496 aaKnown RBP3.33□□□□□ -1.88
VPS13C-201ENST00000249837 IGKV2D-24A0A075B6R9 120 aa3.32□□□□□ -1.88
VPS13C-201ENST00000249837 FAM19A4Q96LR4 140 aa3.32□□□□□ -1.88
VPS13C-201ENST00000249837 C1orf43Q9BWL3 253 aa3.32□□□□□ -1.88
VPS13C-201ENST00000249837 LAMA2P24043 3122 aaKnown RBP3.32□□□□□ -1.88
VPS13C-201ENST00000249837 COX7BP24311 80 aa3.32□□□□□ -1.88
VPS13C-201ENST00000249837 BBC3Q96PG8 261 aaPredicted RBP3.32□□□□□ -1.88
VPS13C-201ENST00000249837 RPL18AQ02543 176 aaKnown RBP3.32□□□□□ -1.88
VPS13C-201ENST00000249837 PLA2G2AP14555 144 aa3.32□□□□□ -1.88
VPS13C-201ENST00000249837 UBE2DNLQ8IWF7 75 aa3.32□□□□□ -1.88
VPS13C-201ENST00000249837 SMIM1B2RUZ4 78 aa3.32□□□□□ -1.88
VPS13C-201ENST00000249837 SETXQ7Z333 2677 aaKnown RBP3.31□□□□□ -1.88
VPS13C-201ENST00000249837 C20orf197Q8N268 126 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 UQCRQO14949 82 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 TMEM256-PLSCR3K7ERE1 68 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 C1orf158Q8N1D5 194 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 PRO0255Q9UI72 69 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 IBA57-AS1B1ANH7 110 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 BEAN1Q3B7T3 259 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 SCXQ7RTU7 201 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 XAGE1AQ9HD64 81 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 TEX15Q9BXT5 2789 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 REG3AQ06141 175 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 MKI67P46013 3256 aaKnown RBP3.31□□□□□ -1.88
VPS13C-201ENST00000249837 PRB2P02812 416 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-201ENST00000249837 CXCL5P42830 114 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 J3QKU1 62 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 F8WEM9 126 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 J3KT08 172 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 BRI3O95415 125 aa3.31□□□□□ -1.88
VPS13C-201ENST00000249837 C9orf116Q5BN46 136 aaPredicted RBP3.3□□□□□ -1.88
VPS13C-201ENST00000249837 C9orf66Q5T8R8 295 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 COL6A5A8TX70 2615 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 USP17L23D6RBM5 183 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 WFDC9Q8NEX5 89 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 LINC00959A0A1B0GUT2 108 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 UPK3BQ9BT76 320 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 KLK5Q9Y337 293 aaPredicted RBP3.3□□□□□ -1.88
VPS13C-201ENST00000249837 A0A087WYN8 130 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 ENHOQ6UWT2 76 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 PSCAO43653 123 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 Q8N2B8 174 aa3.3□□□□□ -1.88
VPS13C-201ENST00000249837 IGLV4-60A0A075B6I1 120 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 JMJD7-PLA2G4BH0Y9G9 81 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 NREPQ16612 68 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 ETDCA0A1B0GVM5 59 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 MRAPQ8TCY5 172 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 DIRC1Q969H9 104 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 LINC01006Q8NI28 216 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 M0QXV9 152 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 SOSTDC1Q6X4U4 206 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 ZNF575Q86XF7 245 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 LINC00337Q8N6G1 96 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 C11orf72Q8NBR9 251 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 C6orf99Q4VX62 202 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 TRBV6-4A0A1B0GX49 114 aa3.29□□□□□ -1.88
VPS13C-201ENST00000249837 UNQ6190/PRO20217Q6UXQ8 127 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 SERP2Q8N6R1 65 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 FAM110AQ9BQ89 295 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 STAB1Q9NY15 2570 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 LRRC75A-AS1Q8N1F1 130 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 A0A087WVE0 104 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 IGSF10Q6WRI0 2623 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 WDFY4Q6ZS81 3184 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 ZNF843Q8N446 348 aa3.28□□□□□ -1.88
VPS13C-201ENST00000249837 FUSP35637 526 aaKnown RBP eCLIP3.27□□□□□ -1.89
VPS13C-201ENST00000249837 VPS13AQ96RL7 3174 aa3.27□□□□□ -1.89
VPS13C-201ENST00000249837 SBSPONQ8IVN8 264 aa3.27□□□□□ -1.89
VPS13C-201ENST00000249837 BPY2O14599 106 aa3.27□□□□□ -1.89
VPS13C-201ENST00000249837 PDE6GP18545 87 aa3.27□□□□□ -1.89
VPS13C-201ENST00000249837 FAM19A1Q7Z5A9 133 aa3.27□□□□□ -1.89
VPS13C-201ENST00000249837 A0A087WZ39 114 aa3.27□□□□□ -1.89
VPS13C-201ENST00000249837 COX7CP15954 63 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms