RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 C11orf68Q9H3H3 251 aaKnown RBP7.55□□□□□ -1.2
USP28-201ENST00000003302 SPANXCQ9NY87 97 aa7.55□□□□□ -1.2
USP28-201ENST00000003302 STAB1Q9NY15 2570 aa7.55□□□□□ -1.2
USP28-201ENST00000003302 TRBV10-2A0A0K0K1G8 114 aa7.55□□□□□ -1.2
USP28-201ENST00000003302 ATXN8Q156A1 80 aa7.55□□□□□ -1.2
USP28-201ENST00000003302 DGAT2L7PQ6IED9 249 aa7.55□□□□□ -1.2
USP28-201ENST00000003302 SMR3AQ99954 134 aa7.55□□□□□ -1.2
USP28-201ENST00000003302 A0A096LPF7 62 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 DNAJC9-AS1A6NH13 148 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 B5MCH6 92 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 C15orf53Q8NAA6 179 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 LST1O00453 97 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 INSP01308 110 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 C4orf3Q8WVX3 66 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 EDA2RQ9HAV5 297 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 IGLV5-45A0A087WSX0 123 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 IGLV5-39A0A0G2JS06 123 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 CLPSL2Q6UWE3 100 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 SPANXA1Q9NS26 97 aa7.54□□□□□ -1.2
USP28-201ENST00000003302 STHQ8IWL8 128 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 IL17DQ8TAD2 202 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 CDC42SE2Q9NRR3 84 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 KMT2BQ9UMN6 2715 aaPredicted RBP7.53□□□□□ -1.2
USP28-201ENST00000003302 NBEAL1Q6ZS30 2694 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.53□□□□□ -1.2
USP28-201ENST00000003302 DNAJC30Q96LL9 226 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 TOMM7Q9P0U1 55 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 NDUFA1O15239 70 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 PRIMA1Q86XR5 153 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 LINC00337Q8N6G1 96 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 UBE2WQ96B02 151 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 BAHCC1Q9P281 2608 aa7.53□□□□□ -1.2
USP28-201ENST00000003302 GAGE6Q13070 117 aa7.52□□□□□ -1.2
USP28-201ENST00000003302 ZNF843Q8N446 348 aa7.52□□□□□ -1.2
USP28-201ENST00000003302 IGKV2-28A0A075B6P5 120 aa7.52□□□□□ -1.21
USP28-201ENST00000003302 IGKV2D-28P01615 120 aa7.52□□□□□ -1.21
USP28-201ENST00000003302 ANAPC13Q9BS18 74 aa7.52□□□□□ -1.21
USP28-201ENST00000003302 FLNBO75369 2602 aaKnown RBP7.52□□□□□ -1.21
USP28-201ENST00000003302 CCL24O00175 119 aa7.52□□□□□ -1.21
USP28-201ENST00000003302 DEFB113Q30KQ7 82 aa7.52□□□□□ -1.21
USP28-201ENST00000003302 DEFB4AO15263 64 aa7.51□□□□□ -1.21
USP28-201ENST00000003302 PRR3P79522 188 aaKnown RBP7.51□□□□□ -1.21
USP28-201ENST00000003302 LYRM7Q5U5X0 104 aa7.51□□□□□ -1.21
USP28-201ENST00000003302 C19orf73Q9NVV2 129 aa7.51□□□□□ -1.21
USP28-201ENST00000003302 ATP5G1P05496 136 aa7.5□□□□□ -1.21
USP28-201ENST00000003302 MEIG1Q5JSS6 88 aa7.5□□□□□ -1.21
USP28-201ENST00000003302 C5orf38Q86SI9 138 aa7.5□□□□□ -1.21
USP28-201ENST00000003302 CHCHD5Q9BSY4 110 aa7.5□□□□□ -1.21
USP28-201ENST00000003302 K7EQD1 137 aa7.5□□□□□ -1.21
USP28-201ENST00000003302 TEX29Q8N6K0 151 aa7.5□□□□□ -1.21
USP28-201ENST00000003302 J3QLI3 93 aa7.5□□□□□ -1.21
USP28-201ENST00000003302 NDUFV3P56181 108 aaKnown RBP7.5□□□□□ -1.21
USP28-201ENST00000003302 PEMTQ9UBM1 199 aa7.49□□□□□ -1.21
USP28-201ENST00000003302 MIR7-3HGQ8N6C7 128 aa7.49□□□□□ -1.21
USP28-201ENST00000003302 TIRAPP58753 221 aa7.49□□□□□ -1.21
USP28-201ENST00000003302 A0A087WYN8 130 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 PFN2P35080 140 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 DSCR9P59020 149 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 KRTAP1-1Q07627 177 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 TRGV2A0A075B6R0 118 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 SLPIP03973 132 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 DEFB130BP0DP73 79 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 DEFB130AP0DP74 79 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 DAZ2Q13117 558 aaKnown RBP7.48□□□□□ -1.21
USP28-201ENST00000003302 DAZ4Q86SG3 579 aaKnown RBP7.48□□□□□ -1.21
USP28-201ENST00000003302 LINC01006Q8NI28 216 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 DAZ3Q9NR90 486 aaKnown RBP7.48□□□□□ -1.21
USP28-201ENST00000003302 SHISA2Q6UWI4 295 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 GAGE2BQ13066 116 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 GAGE2EQ4V326 116 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 CSNK1G2-AS1Q8NCQ2 148 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 GAGE2DQ9UEU5 116 aa7.48□□□□□ -1.21
USP28-201ENST00000003302 SNCGO76070 127 aa7.47□□□□□ -1.21
USP28-201ENST00000003302 KRTAP10-3P60369 221 aa7.47□□□□□ -1.21
USP28-201ENST00000003302 COL6A5A8TX70 2615 aa7.47□□□□□ -1.21
USP28-201ENST00000003302 F8P00451 2351 aa7.47□□□□□ -1.21
USP28-201ENST00000003302 Q8NDZ9 215 aa7.46□□□□□ -1.21
USP28-201ENST00000003302 RPL36AP83881 106 aaKnown RBP7.46□□□□□ -1.21
USP28-201ENST00000003302 RPL36ALQ969Q0 106 aaKnown RBP7.46□□□□□ -1.21
USP28-201ENST00000003302 HERVK_113P63121 156 aa7.45□□□□□ -1.22
USP28-201ENST00000003302 LINC00482Q8N8I6 264 aa7.45□□□□□ -1.22
USP28-201ENST00000003302 LINC00526Q96FQ7 95 aa7.45□□□□□ -1.22
USP28-201ENST00000003302 C9orf116Q5BN46 136 aaPredicted RBP7.45□□□□□ -1.22
USP28-201ENST00000003302 FHL2Q14192 279 aa7.44□□□□□ -1.22
USP28-201ENST00000003302 TENM2Q9NT68 2774 aa7.44□□□□□ -1.22
USP28-201ENST00000003302 COX7A2LO14548 114 aa7.44□□□□□ -1.22
USP28-201ENST00000003302 IGHV3OR16-9A0A0B4J2B5 98 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 CCL18P55774 89 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 SRRM2Q9UQ35 2752 aaKnown RBP7.43□□□□□ -1.22
USP28-201ENST00000003302 IGLV10-54A0A075B6I4 117 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 XCL1P47992 114 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 SMIM11BQ8TCY0 68 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 COL7A1Q02388 2944 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 TMEM262E9PQX1 116 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 M0QXV9 152 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 COX6CP09669 75 aa7.43□□□□□ -1.22
USP28-201ENST00000003302 H3BT86 120 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 LINC01600Q96MT4 127 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 CYSTM1Q9H1C7 97 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 TIMM17BO60830 172 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms