RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 H7C2G1 150 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 YAE1D1Q9NRH1 226 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 CDKN2A-AS1Q9UH64 79 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 IGHV3OR16-12A0A075B7B8 117 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 C9JAW5 83 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 NDUFA1O15239 70 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 PRSS2P07478 247 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 IFITM1P13164 125 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 IGLV5-39A0A0G2JS06 123 aa9.15□□□□□ -0.94
LINC00540-203ENST00000631321 CCL24O00175 119 aa9.15□□□□□ -0.94
LINC00540-203ENST00000631321 TRIAP1O43715 76 aa9.15□□□□□ -0.94
LINC00540-203ENST00000631321 Q1RN00 199 aa9.15□□□□□ -0.94
LINC00540-203ENST00000631321 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.15□□□□□ -0.94
LINC00540-203ENST00000631321 TMEM101Q96IK0 257 aa9.15□□□□□ -0.94
LINC00540-203ENST00000631321 CSDC2Q9Y534 153 aaKnown RBP9.15□□□□□ -0.94
LINC00540-203ENST00000631321 TRGV1A0A0A0MS02 117 aa9.15□□□□□ -0.94
LINC00540-203ENST00000631321 LINC01620Q4KN68 170 aa9.15□□□□□ -0.94
LINC00540-203ENST00000631321 HERVK_113P63121 156 aa9.14□□□□□ -0.95
LINC00540-203ENST00000631321 DGAT2L7PQ6IED9 249 aa9.14□□□□□ -0.95
LINC00540-203ENST00000631321 TRAV4A0A0B4J268 109 aa9.14□□□□□ -0.95
LINC00540-203ENST00000631321 K7EQD1 137 aa9.14□□□□□ -0.95
LINC00540-203ENST00000631321 RPL36AP83881 106 aaKnown RBP9.14□□□□□ -0.95
LINC00540-203ENST00000631321 DAZ2Q13117 558 aaKnown RBP9.14□□□□□ -0.95
LINC00540-203ENST00000631321 DAZ4Q86SG3 579 aaKnown RBP9.14□□□□□ -0.95
LINC00540-203ENST00000631321 RPL36ALQ969Q0 106 aaKnown RBP9.14□□□□□ -0.95
LINC00540-203ENST00000631321 DAZ3Q9NR90 486 aaKnown RBP9.14□□□□□ -0.95
LINC00540-203ENST00000631321 ICOSQ9Y6W8 199 aa9.14□□□□□ -0.95
LINC00540-203ENST00000631321 COX6A2Q02221 97 aa9.13□□□□□ -0.95
LINC00540-203ENST00000631321 LINC00242Q5T6M2 205 aa9.13□□□□□ -0.95
LINC00540-203ENST00000631321 ESM1Q9NQ30 184 aa9.13□□□□□ -0.95
LINC00540-203ENST00000631321 TRBV10-2A0A0K0K1G8 114 aa9.12□□□□□ -0.95
LINC00540-203ENST00000631321 LINC00694P0DN24 101 aa9.12□□□□□ -0.95
LINC00540-203ENST00000631321 NTM-AS1Q6ZSK4 140 aa9.12□□□□□ -0.95
LINC00540-203ENST00000631321 Q6ZTI0 123 aa9.12□□□□□ -0.95
LINC00540-203ENST00000631321 A0A1W2PRX2 142 aa9.12□□□□□ -0.95
LINC00540-203ENST00000631321 CMC4P56277 68 aaPredicted RBP9.12□□□□□ -0.95
LINC00540-203ENST00000631321 ZNF469Q96JG9 3925 aaPredicted RBP9.12□□□□□ -0.95
LINC00540-203ENST00000631321 TMEM262E9PQX1 116 aa9.11□□□□□ -0.95
LINC00540-203ENST00000631321 GIG44P09565 113 aaPredicted RBP9.11□□□□□ -0.95
LINC00540-203ENST00000631321 MT-ATP8P03928 68 aa9.11□□□□□ -0.95
LINC00540-203ENST00000631321 XGP55808 180 aa9.11□□□□□ -0.95
LINC00540-203ENST00000631321 C11orf44Q8N8P7 122 aa9.11□□□□□ -0.95
LINC00540-203ENST00000631321 WFDC11Q8NEX6 87 aa9.11□□□□□ -0.95
LINC00540-203ENST00000631321 RPL13AP40429 203 aaKnown RBP9.1□□□□□ -0.95
LINC00540-203ENST00000631321 FAM110AQ9BQ89 295 aa9.1□□□□□ -0.95
LINC00540-203ENST00000631321 EPG5Q9HCE0 2579 aa9.1□□□□□ -0.95
LINC00540-203ENST00000631321 SMIM1B2RUZ4 78 aa9.1□□□□□ -0.95
LINC00540-203ENST00000631321 COX6CP09669 75 aa9.1□□□□□ -0.95
LINC00540-203ENST00000631321 CIRBPQ14011 172 aaKnown RBP9.1□□□□□ -0.95
LINC00540-203ENST00000631321 CITED2Q99967 270 aaPredicted RBP9.1□□□□□ -0.95
LINC00540-203ENST00000631321 CDC42SE2Q9NRR3 84 aa9.1□□□□□ -0.95
LINC00540-203ENST00000631321 APCP25054 2843 aa9.1□□□□□ -0.95
LINC00540-203ENST00000631321 NPC2P61916 151 aa9.09□□□□□ -0.95
LINC00540-203ENST00000631321 C16orf95Q9H693 158 aa9.09□□□□□ -0.95
LINC00540-203ENST00000631321 PLAC8L1A1L4L8 177 aa9.09□□□□□ -0.96
LINC00540-203ENST00000631321 Q9H8V8 135 aa9.09□□□□□ -0.96
LINC00540-203ENST00000631321 TLN2Q9Y4G6 2542 aa9.09□□□□□ -0.96
LINC00540-203ENST00000631321 CHD6Q8TD26 2715 aa9.08□□□□□ -0.96
LINC00540-203ENST00000631321 A0A1B0GV72 72 aa9.08□□□□□ -0.96
LINC00540-203ENST00000631321 F5H768 121 aa9.08□□□□□ -0.96
LINC00540-203ENST00000631321 LINC00308Q8TCZ7 52 aa9.08□□□□□ -0.96
LINC00540-203ENST00000631321 NTN5Q8WTR8 489 aaPredicted RBP9.08□□□□□ -0.96
LINC00540-203ENST00000631321 NOP10Q9NPE3 64 aaKnown RBP9.08□□□□□ -0.96
LINC00540-203ENST00000631321 ITPR3Q14573 2671 aa9.08□□□□□ -0.96
LINC00540-203ENST00000631321 GAGE12JA6NER3 117 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 LST1O00453 97 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 CIDEAO60543 219 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 GAGE4Q13068 117 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 GAGE5Q13069 117 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 DAND5Q8N907 189 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 C16orf74Q96GX8 76 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 ZNF625Q96I27 306 aaPredicted RBP9.07□□□□□ -0.96
LINC00540-203ENST00000631321 H3BT86 120 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 NDUFA7O95182 113 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 LINC01006Q8NI28 216 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 PPDPFQ9H3Y8 114 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 C19orf73Q9NVV2 129 aa9.07□□□□□ -0.96
LINC00540-203ENST00000631321 TRAV13-1A0A0B4J241 112 aa9.06□□□□□ -0.96
LINC00540-203ENST00000631321 H7C423 109 aa9.06□□□□□ -0.96
LINC00540-203ENST00000631321 COPS9Q8WXC6 57 aa9.06□□□□□ -0.96
LINC00540-203ENST00000631321 OVOL2Q9BRP0 275 aa9.06□□□□□ -0.96
LINC00540-203ENST00000631321 RNASE1P07998 156 aaKnown RBP9.06□□□□□ -0.96
LINC00540-203ENST00000631321 KRTAP1-1Q07627 177 aa9.06□□□□□ -0.96
LINC00540-203ENST00000631321 TMEM243Q9BU79 118 aa9.06□□□□□ -0.96
LINC00540-203ENST00000631321 IGLV1-51P01701 117 aa9.05□□□□□ -0.96
LINC00540-203ENST00000631321 SONP18583 2426 aaKnown RBP9.05□□□□□ -0.96
LINC00540-203ENST00000631321 TRBV6-4A0A1B0GX49 114 aa9.05□□□□□ -0.96
LINC00540-203ENST00000631321 HERV-K104P63124 156 aa9.05□□□□□ -0.96
LINC00540-203ENST00000631321 C2orf82Q6UX34 121 aa9.05□□□□□ -0.96
LINC00540-203ENST00000631321 CSNK1G2-AS1Q8NCQ2 148 aa9.05□□□□□ -0.96
LINC00540-203ENST00000631321 CKS1BP61024 79 aa9.04□□□□□ -0.96
LINC00540-203ENST00000631321 CLEC2BQ92478 149 aa9.04□□□□□ -0.96
LINC00540-203ENST00000631321 UBE2WQ96B02 151 aa9.04□□□□□ -0.96
LINC00540-203ENST00000631321 TEX49A0A1B0GTD5 131 aa9.04□□□□□ -0.96
LINC00540-203ENST00000631321 SOSTDC1Q6X4U4 206 aa9.04□□□□□ -0.96
LINC00540-203ENST00000631321 NBPF19A0A087WUL8 3843 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 UBE2L6O14933 153 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 GAGE7O76087 117 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 GAGE12FP0CL80 117 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 GAGE12GP0CL81 117 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms