RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 C9orf118A6NHY6 69 aa15.58■□□□□ 0.09
PNKP-220ENST00000627232 SMIM13P0DJ93 91 aa15.58■□□□□ 0.09
PNKP-220ENST00000627232 DEFB130BP0DP73 79 aa15.58■□□□□ 0.09
PNKP-220ENST00000627232 DEFB130AP0DP74 79 aa15.58■□□□□ 0.09
PNKP-220ENST00000627232 UBE2D1P51668 147 aa15.58■□□□□ 0.09
PNKP-220ENST00000627232 PTTG1IPP53801 180 aa15.58■□□□□ 0.09
PNKP-220ENST00000627232 TMEM243Q9BU79 118 aa15.58■□□□□ 0.09
PNKP-220ENST00000627232 F8P00451 2351 aa15.58■□□□□ 0.08
PNKP-220ENST00000627232 TIRAPP58753 221 aa15.58■□□□□ 0.08
PNKP-220ENST00000627232 DEFB135Q30KP9 77 aa15.57■□□□□ 0.08
PNKP-220ENST00000627232 FAM19A3Q7Z5A8 133 aa15.57■□□□□ 0.08
PNKP-220ENST00000627232 A0A0J9YY99 117 aa15.56■□□□□ 0.08
PNKP-220ENST00000627232 UBE2V1Q13404 147 aa15.56■□□□□ 0.08
PNKP-220ENST00000627232 VAMP3Q15836 100 aa15.56■□□□□ 0.08
PNKP-220ENST00000627232 SPANXB1Q9NS25 103 aaPredicted RBP15.56■□□□□ 0.08
PNKP-220ENST00000627232 NIPBLQ6KC79 2804 aaeCLIP15.56■□□□□ 0.08
PNKP-220ENST00000627232 NOTCH3Q9UM47 2321 aa15.56■□□□□ 0.08
PNKP-220ENST00000627232 OR5A1Q8NGJ0 315 aa15.55■□□□□ 0.08
PNKP-220ENST00000627232 IGLV5-45A0A087WSX0 123 aa15.54■□□□□ 0.08
PNKP-220ENST00000627232 K7EP13 123 aa15.54■□□□□ 0.08
PNKP-220ENST00000627232 UBE2L6O14933 153 aa15.54■□□□□ 0.08
PNKP-220ENST00000627232 GEMIN7Q9H840 131 aaKnown RBP15.54■□□□□ 0.08
PNKP-220ENST00000627232 MIFP14174 115 aa15.53■□□□□ 0.08
PNKP-220ENST00000627232 FAM222AQ5U5X8 452 aa15.53■□□□□ 0.08
PNKP-220ENST00000627232 IGHV1-58A0A0C4DH39 117 aa15.53■□□□□ 0.08
PNKP-220ENST00000627232 IGHV4-30-4P0DP06 118 aa15.53■□□□□ 0.08
PNKP-220ENST00000627232 TEP1Q99973 2627 aaKnown RBP15.52■□□□□ 0.08
PNKP-220ENST00000627232 IGHV3-30-3P0DP02 117 aa15.52■□□□□ 0.07
PNKP-220ENST00000627232 AMMECR1LQ6DCA0 310 aa15.52■□□□□ 0.07
PNKP-220ENST00000627232 SHISA2Q6UWI4 295 aa15.52■□□□□ 0.07
PNKP-220ENST00000627232 TMEM101Q96IK0 257 aa15.52■□□□□ 0.07
PNKP-220ENST00000627232 CDC42SE2Q9NRR3 84 aa15.52■□□□□ 0.07
PNKP-220ENST00000627232 NHP2Q9NX24 153 aaKnown RBP15.52■□□□□ 0.07
PNKP-220ENST00000627232 IGHV4-28A0A0C4DH34 117 aa15.51■□□□□ 0.07
PNKP-220ENST00000627232 HERVK_113P63121 156 aa15.51■□□□□ 0.07
PNKP-220ENST00000627232 SRSF9Q13242 221 aaKnown RBP eCLIP15.51■□□□□ 0.07
PNKP-220ENST00000627232 RNF183Q96D59 192 aa15.51■□□□□ 0.07
PNKP-220ENST00000627232 PRO0255Q9UI72 69 aa15.51■□□□□ 0.07
PNKP-220ENST00000627232 IGHV3-64A0A075B6Q5 118 aa15.5■□□□□ 0.07
PNKP-220ENST00000627232 TRBV6-8A0A0A6YYG3 113 aa15.5■□□□□ 0.07
PNKP-220ENST00000627232 A0A1B0GWB2 263 aa15.5■□□□□ 0.07
PNKP-220ENST00000627232 C3orf56Q8N813 242 aa15.5■□□□□ 0.07
PNKP-220ENST00000627232 RAB37Q96AX2 223 aa15.5■□□□□ 0.07
PNKP-220ENST00000627232 VSIG2Q96IQ7 327 aa15.5■□□□□ 0.07
PNKP-220ENST00000627232 CCL25O15444 150 aa15.49■□□□□ 0.07
PNKP-220ENST00000627232 Q8NAQ8 132 aa15.49■□□□□ 0.07
PNKP-220ENST00000627232 TMEM238LA0A1B0GVL6 79 aa15.48■□□□□ 0.07
PNKP-220ENST00000627232 A6NJY4 79 aa15.48■□□□□ 0.07
PNKP-220ENST00000627232 H3BUT2 72 aa15.48■□□□□ 0.07
PNKP-220ENST00000627232 C12orf74Q32Q52 190 aa15.48■□□□□ 0.07
PNKP-220ENST00000627232 GYPEP15421 78 aa15.48■□□□□ 0.07
PNKP-220ENST00000627232 LINC00242Q5T6M2 205 aa15.48■□□□□ 0.07
PNKP-220ENST00000627232 TENM1Q9UKZ4 2725 aa15.47■□□□□ 0.07
PNKP-220ENST00000627232 TRAV8-3A0A0A6YYJ7 113 aa15.47■□□□□ 0.07
PNKP-220ENST00000627232 ATP6V0E2Q8NHE4 81 aa15.47■□□□□ 0.07
PNKP-220ENST00000627232 CDKN2A-AS1Q9UH64 79 aa15.47■□□□□ 0.07
PNKP-220ENST00000627232 SPINK8P0C7L1 97 aa15.46■□□□□ 0.07
PNKP-220ENST00000627232 EGFEM1PQ0D2K5 195 aa15.46■□□□□ 0.07
PNKP-220ENST00000627232 ATRQ13535 2644 aa15.46■□□□□ 0.06
PNKP-220ENST00000627232 A8MZ25 164 aa15.45■□□□□ 0.06
PNKP-220ENST00000627232 K7ERJ3 54 aa15.45■□□□□ 0.06
PNKP-220ENST00000627232 DAD1P61803 113 aa15.45■□□□□ 0.06
PNKP-220ENST00000627232 A0A1W2PPM0 123 aa15.44■□□□□ 0.06
PNKP-220ENST00000627232 IGHV3-30P01768 117 aa15.44■□□□□ 0.06
PNKP-220ENST00000627232 IGHV3-30-5P0DP03 117 aa15.44■□□□□ 0.06
PNKP-220ENST00000627232 COX6A2Q02221 97 aa15.44■□□□□ 0.06
PNKP-220ENST00000627232 OXLD1Q5BKU9 147 aa15.44■□□□□ 0.06
PNKP-220ENST00000627232 C10orf126Q8N4M7 172 aa15.44■□□□□ 0.06
PNKP-220ENST00000627232 GAGE6Q13070 117 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 SAMD5Q5TGI4 173 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 VWFP04275 2813 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 A0A0J9YXY3 114 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 TMEM238C9JI98 176 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 DEFB4AO15263 64 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 PAX4O43316 350 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 KRTAP10-11P60412 298 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 ZFAND6Q6FIF0 208 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 GTF2H5Q6ZYL4 71 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 CHCHD5Q9BSY4 110 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 NDUFA12Q9UI09 145 aa15.43■□□□□ 0.06
PNKP-220ENST00000627232 TRAV13-1A0A0B4J241 112 aa15.42■□□□□ 0.06
PNKP-220ENST00000627232 IGLV5-39A0A0G2JS06 123 aa15.42■□□□□ 0.06
PNKP-220ENST00000627232 SPART-AS1P0CW21 52 aa15.42■□□□□ 0.06
PNKP-220ENST00000627232 GAGE10A6NGK3 116 aa15.41■□□□□ 0.06
PNKP-220ENST00000627232 IGLL5B9A064 214 aa15.41■□□□□ 0.06
PNKP-220ENST00000627232 ATP5G1P05496 136 aa15.41■□□□□ 0.06
PNKP-220ENST00000627232 K7EP34 96 aa15.4■□□□□ 0.06
PNKP-220ENST00000627232 FABP2P12104 132 aa15.4■□□□□ 0.06
PNKP-220ENST00000627232 PRIMA1Q86XR5 153 aa15.4■□□□□ 0.06
PNKP-220ENST00000627232 NAA38Q9BRA0 125 aaKnown RBP15.4■□□□□ 0.06
PNKP-220ENST00000627232 TEX48A0A1B0GUV7 120 aa15.39■□□□□ 0.05
PNKP-220ENST00000627232 CELA1Q9UNI1 258 aa15.39■□□□□ 0.05
PNKP-220ENST00000627232 NDUFA1O15239 70 aa15.38■□□□□ 0.05
PNKP-220ENST00000627232 SMIM1B2RUZ4 78 aa15.37■□□□□ 0.05
PNKP-220ENST00000627232 IGLV4-60A0A075B6I1 120 aa15.36■□□□□ 0.05
PNKP-220ENST00000627232 TRAV26-1A0A087WT03 109 aa15.36■□□□□ 0.05
PNKP-220ENST00000627232 A0A1B0GUV1 79 aa15.36■□□□□ 0.05
PNKP-220ENST00000627232 F5H768 121 aa15.36■□□□□ 0.05
PNKP-220ENST00000627232 TIMM17BO60830 172 aa15.36■□□□□ 0.05
PNKP-220ENST00000627232 LITAFQ99732 161 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms