RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 WFDC6Q9BQY6 131 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 PCBD2Q9H0N5 130 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 ACACAQ13085 2346 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 WNK3Q9BYP7 1800 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 LAMC1P11047 1609 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 APOC4-APOC2K7ER74 178 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 YPEL1O60688 119 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 TNFP01375 233 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 PAEPP09466 180 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 HLA-DRB4P13762 266 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 SAMD13Q5VXD3 122 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 TMEM35BQ8NCS4 154 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 BANF2Q9H503 90 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 SCN3BQ9NY72 215 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 HLA-DRB4X5D2U9 266 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 OVOS2A0A0G2JMS6 1433 aa-0.93□□□□□ -2.56
SCN1A-208ENST00000625916 AKAP9Q99996 3911 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 SMARCA2P51531 1590 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 DNAJC13O75165 2243 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 DCDP81605 110 aaKnown RBP-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 CLLU1Q5K131 121 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 SPAG11AQ6PDA7 123 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 TOMM20LQ6UXN7 152 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 ATP11AUNQ6ZP68 121 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 OR8I2Q8N0Y5 310 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 NPVFQ9HCQ7 196 aa-0.94□□□□□ -2.56
SCN1A-208ENST00000625916 E5RI56 91 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 MT-ND4LP03901 98 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 SMIM6P0DI80 62 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 G0S2P27469 103 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 TMEM128Q5BJH2 165 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 Q5VV11 94 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 TP53AIP1Q9HCN2 124 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 TSC2P49815 1807 aa-0.95□□□□□ -2.56
SCN1A-208ENST00000625916 IBTKQ9P2D0 1353 aaPredicted RBP-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 WDFY3Q8IZQ1 3526 aa-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 FAM92AA1XBS5 289 aa-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 SPRR1BP22528 89 aa-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 CFAP126Q5VTH2 177 aa-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 MT1LQ93083 61 aa-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 IFT172Q9UG01 1749 aa-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 SIPA1L3O60292 1781 aaPredicted RBP-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 KDM3BQ7LBC6 1761 aa-0.96□□□□□ -2.56
SCN1A-208ENST00000625916 MUC22E2RYF6 1773 aaPredicted RBP-0.97□□□□□ -2.56
SCN1A-208ENST00000625916 J3KT08 172 aa-0.97□□□□□ -2.56
SCN1A-208ENST00000625916 S100A3P33764 101 aa-0.97□□□□□ -2.56
SCN1A-208ENST00000625916 TMEM244Q5VVB8 128 aa-0.97□□□□□ -2.56
SCN1A-208ENST00000625916 BAGE3Q86Y29 109 aa-0.97□□□□□ -2.56
SCN1A-208ENST00000625916 MAGOHBQ96A72 148 aaKnown RBP-0.97□□□□□ -2.56
SCN1A-208ENST00000625916 NDUFA12Q9UI09 145 aa-0.97□□□□□ -2.56
SCN1A-208ENST00000625916 TRBV6-1A0A0K0K1D8 114 aa-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 CLPSL1A2RUU4 121 aa-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 I3L2K1 104 aa-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 GNG10P50151 68 aa-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 LINC01545Q5VT33 79 aa-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 RPRMQ9NS64 109 aa-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 LSM2Q9Y333 95 aaKnown RBP-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 VPS13AQ96RL7 3174 aa-0.98□□□□□ -2.57
SCN1A-208ENST00000625916 ERCC6L2Q5T890 1561 aa-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 LRP6O75581 1613 aa-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 A0A1B0GV72 72 aa-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 S100GP29377 79 aa-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 RPL7L1Q6DKI1 246 aaKnown RBP-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 CDC26Q8NHZ8 85 aa-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 C10orf82Q8WW14 230 aa-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 ERCC6Q03468 1493 aa-0.99□□□□□ -2.57
SCN1A-208ENST00000625916 XIRP1Q702N8 1843 aaKnown RBP-1□□□□□ -2.57
SCN1A-208ENST00000625916 LCE6AA0A183 80 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 A6NIN4 97 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 COX6B1P14854 86 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 UBE2D1P51668 147 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 RPS28P62857 69 aaKnown RBP-1□□□□□ -2.57
SCN1A-208ENST00000625916 PIGYQ3MUY2 71 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 C9orf116Q5BN46 136 aaPredicted RBP-1□□□□□ -2.57
SCN1A-208ENST00000625916 SPANXN1Q5VSR9 72 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 PPP1R2P3Q6NXS1 205 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 TCTE3Q8IZS6 198 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 FXYD6Q9H0Q3 95 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 MYH13Q9UKX3 1938 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 UTRNP46939 3433 aa-1□□□□□ -2.57
SCN1A-208ENST00000625916 TRAV36DV7A0A075B6V5 113 aa-1.01□□□□□ -2.57
SCN1A-208ENST00000625916 SPINK4O60575 86 aa-1.01□□□□□ -2.57
SCN1A-208ENST00000625916 IFNA17P01571 189 aa-1.01□□□□□ -2.57
SCN1A-208ENST00000625916 CMPK1P30085 196 aa-1.01□□□□□ -2.57
SCN1A-208ENST00000625916 DEFB1P60022 68 aa-1.01□□□□□ -2.57
SCN1A-208ENST00000625916 SKA2Q8WVK7 121 aaPredicted RBP-1.01□□□□□ -2.57
SCN1A-208ENST00000625916 GOLGA4Q13439 2230 aaKnown RBP-1.01□□□□□ -2.57
SCN1A-208ENST00000625916 SCTP09683 121 aa-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 PIRTP0C851 137 aa-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 UBE2G1P62253 170 aa-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 TFAMQ00059 246 aaKnown RBP-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 IQSEC2Q5JU85 1478 aa-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 VSTM2AQ8TAG5 236 aa-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 SDF2Q99470 211 aa-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 SMPXQ9UHP9 88 aa-1.02□□□□□ -2.57
SCN1A-208ENST00000625916 MYH8P13535 1937 aa-1.03□□□□□ -2.57
SCN1A-208ENST00000625916 COL4A6Q14031 1691 aa-1.03□□□□□ -2.57
SCN1A-208ENST00000625916 PAPPAQ13219 1627 aa-1.03□□□□□ -2.57
SCN1A-208ENST00000625916 WDR7Q9Y4E6 1490 aa-1.03□□□□□ -2.57
SCN1A-208ENST00000625916 TRBV20-1A0A075B6N2 111 aa-1.03□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms