RNA–Protein interactions for RNA: ENST00000621967.4

FAM3A-222, Transcript of family with sequence similarity 3 member A, human

TSL 2

Gene FAM3A, Length 1,901 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM3A-222	ENST00000621967	C10orf126	Q8N4M7	172 aa		12.58	□□□□□ -0.39
FAM3A-222	ENST00000621967	SPX	Q9BT56	116 aa		12.58	□□□□□ -0.39
FAM3A-222	ENST00000621967	CHCHD7	Q9BUK0	85 aa		12.58	□□□□□ -0.39
FAM3A-222	ENST00000621967	CMYA5	Q8N3K9	4069 aa		12.58	□□□□□ -0.4
FAM3A-222	ENST00000621967		J3QR89	54 aa		12.58	□□□□□ -0.4
FAM3A-222	ENST00000621967	INS	P01308	110 aa		12.58	□□□□□ -0.4
FAM3A-222	ENST00000621967	IGHV3-53	P01767	116 aa		12.58	□□□□□ -0.4
FAM3A-222	ENST00000621967	MTURN	Q8N3F0	131 aa		12.58	□□□□□ -0.4
FAM3A-222	ENST00000621967		Q9UF83	564 aa		12.58	□□□□□ -0.4
FAM3A-222	ENST00000621967	TRAV25	A0A0B4J276	109 aa		12.57	□□□□□ -0.4
FAM3A-222	ENST00000621967	DNAJC30	Q96LL9	226 aa		12.57	□□□□□ -0.4
FAM3A-222	ENST00000621967	SPANXA1	Q9NS26	97 aa		12.57	□□□□□ -0.4
FAM3A-222	ENST00000621967	PKD1L1	Q8TDX9	2849 aa		12.57	□□□□□ -0.4
FAM3A-222	ENST00000621967	LOC107984156	A0A0G2JMH3	177 aa		12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	SMCP	P49901	116 aa	Predicted RBP	12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	ARL17A	Q8IVW1	177 aa		12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	LINC01587	Q99440	93 aa		12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	PRO1854	Q9UHT4	67 aa		12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	RS1	O15537	224 aa		12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	IGHV3-30-3	P0DP02	117 aa		12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	UBE2D4	Q9Y2X8	147 aa		12.56	□□□□□ -0.4
FAM3A-222	ENST00000621967	IGHV3-64	A0A075B6Q5	118 aa		12.55	□□□□□ -0.4
FAM3A-222	ENST00000621967	CEMP1	Q6PRD7	247 aa	Predicted RBP	12.55	□□□□□ -0.4
FAM3A-222	ENST00000621967	ATP6V0E2	Q8NHE4	81 aa		12.55	□□□□□ -0.4
FAM3A-222	ENST00000621967		A4D1N5	150 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967	TMEM238	C9JI98	176 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967	EIF4EBP3	O60516	100 aa	Predicted RBP	12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967	PSMB2	P49721	201 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967	ODF3L2	Q3SX64	289 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967	TIMM21	Q9BVV7	248 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967	TRBV20-1	A0A075B6N2	111 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967		A0A0B4J2C4	111 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967		A0A0J9YXY3	114 aa		12.54	□□□□□ -0.4
FAM3A-222	ENST00000621967	TINCR	A0A1B0GVN0	87 aa		12.53	□□□□□ -0.4
FAM3A-222	ENST00000621967	OXLD1	Q5BKU9	147 aa		12.53	□□□□□ -0.4
FAM3A-222	ENST00000621967	SFTA2	Q6UW10	78 aa		12.53	□□□□□ -0.4
FAM3A-222	ENST00000621967	IGHV1-58	A0A0C4DH39	117 aa		12.52	□□□□□ -0.4
FAM3A-222	ENST00000621967	TCL1B	O95988	128 aa		12.52	□□□□□ -0.4
FAM3A-222	ENST00000621967	IL17D	Q8TAD2	202 aa		12.52	□□□□□ -0.4
FAM3A-222	ENST00000621967	TMEM263	Q8WUH6	116 aa	Known RBP	12.52	□□□□□ -0.4
FAM3A-222	ENST00000621967	SPATA25	Q9BR10	227 aa		12.52	□□□□□ -0.4
FAM3A-222	ENST00000621967	WIPF1	O43516	503 aa		12.52	□□□□□ -0.41
FAM3A-222	ENST00000621967	MUSTN1	Q8IVN3	82 aa		12.52	□□□□□ -0.41
FAM3A-222	ENST00000621967	LITAF	Q99732	161 aa		12.52	□□□□□ -0.41
FAM3A-222	ENST00000621967	C1QTNF4	Q9BXJ3	329 aa		12.52	□□□□□ -0.41
FAM3A-222	ENST00000621967	IGHV3-33	P01772	117 aa		12.51	□□□□□ -0.41
FAM3A-222	ENST00000621967	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967	IGKV2-29	A2NJV5	120 aa	Predicted RBP	12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967	GAGE12H	A6NDE8	117 aa		12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967	RNASE13	Q5GAN3	156 aa	Known RBP	12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967	SBSPON	Q8IVN8	264 aa		12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967	TRAV8-3	A0A0A6YYJ7	113 aa		12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967		Q6ZUT4	128 aa		12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967	C1orf158	Q8N1D5	194 aa		12.5	□□□□□ -0.41
FAM3A-222	ENST00000621967	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	12.49	□□□□□ -0.41
FAM3A-222	ENST00000621967	AZU1	P20160	251 aa		12.49	□□□□□ -0.41
FAM3A-222	ENST00000621967	FOXI1	Q12951	378 aa		12.49	□□□□□ -0.41
FAM3A-222	ENST00000621967	VSIG2	Q96IQ7	327 aa		12.49	□□□□□ -0.41
FAM3A-222	ENST00000621967	XCL2	Q9UBD3	114 aa		12.49	□□□□□ -0.41
FAM3A-222	ENST00000621967	MGAM2	Q2M2H8	2515 aa		12.48	□□□□□ -0.41
FAM3A-222	ENST00000621967	IGHV3-38	A0A0C4DH36	116 aa		12.48	□□□□□ -0.41
FAM3A-222	ENST00000621967	STH	Q8IWL8	128 aa		12.48	□□□□□ -0.41
FAM3A-222	ENST00000621967	SPANXD	Q9BXN6	97 aa		12.48	□□□□□ -0.41
FAM3A-222	ENST00000621967	SPANXC	Q9NY87	97 aa		12.48	□□□□□ -0.41
FAM3A-222	ENST00000621967	SIGMAR1	Q99720	223 aa		12.47	□□□□□ -0.41
FAM3A-222	ENST00000621967	IGLV5-45	A0A087WSX0	123 aa		12.47	□□□□□ -0.41
FAM3A-222	ENST00000621967	NDUFA12	Q9UI09	145 aa		12.47	□□□□□ -0.41
FAM3A-222	ENST00000621967	ERG28	Q9UKR5	140 aa		12.46	□□□□□ -0.42
FAM3A-222	ENST00000621967	TIRAP	P58753	221 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	ZFAND6	Q6FIF0	208 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	TEN1	Q86WV5	123 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	SPINK8	P0C7L1	97 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	SCGB1C2	P0DMR2	95 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	SCGB1A1	P11684	91 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	EGFEM1P	Q0D2K5	195 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	GTSF1L	Q9H1H1	148 aa		12.45	□□□□□ -0.42
FAM3A-222	ENST00000621967	CMC4	P56277	68 aa	Predicted RBP	12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967	MIA	Q16674	131 aa		12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967	ADAMTSL4-AS1	Q5T5F5	129 aa		12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967	GEMIN7	Q9H840	131 aa	Known RBP	12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967	TRGV1	A0A0A0MS02	117 aa		12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967	TRBV10-1	A0A0K0K1A3	114 aa		12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967		M0QXV9	152 aa		12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967	KRTAP10-11	P60412	298 aa		12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967	PPDPFL	Q8WWR9	84 aa		12.43	□□□□□ -0.42
FAM3A-222	ENST00000621967		A8MZ25	164 aa		12.42	□□□□□ -0.42
FAM3A-222	ENST00000621967	TIMM17B	O60830	172 aa		12.42	□□□□□ -0.42
FAM3A-222	ENST00000621967	RNF183	Q96D59	192 aa		12.42	□□□□□ -0.42
FAM3A-222	ENST00000621967	CARD19	Q96LW7	228 aa		12.42	□□□□□ -0.42
FAM3A-222	ENST00000621967	CDKN2A-AS1	Q9UH64	79 aa		12.42	□□□□□ -0.42
FAM3A-222	ENST00000621967	NOTCH1	P46531	2555 aa		12.41	□□□□□ -0.42
FAM3A-222	ENST00000621967	IGHV3OR16-12	A0A075B7B8	117 aa		12.41	□□□□□ -0.42
FAM3A-222	ENST00000621967	FAM19A3	Q7Z5A8	133 aa		12.41	□□□□□ -0.42
FAM3A-222	ENST00000621967	TRBV30	A0A0K0K1B3	111 aa		12.41	□□□□□ -0.42
FAM3A-222	ENST00000621967		K7EQD1	137 aa		12.41	□□□□□ -0.42
FAM3A-222	ENST00000621967	FAM110A	Q9BQ89	295 aa		12.41	□□□□□ -0.42
FAM3A-222	ENST00000621967	NBEAL1	Q6ZS30	2694 aa		12.4	□□□□□ -0.42
FAM3A-222	ENST00000621967	TRAV4	A0A0B4J268	109 aa		12.4	□□□□□ -0.42
FAM3A-222	ENST00000621967		Q6ZTI0	123 aa		12.4	□□□□□ -0.42
FAM3A-222	ENST00000621967	CSDC2	Q9Y534	153 aa	Known RBP	12.4	□□□□□ -0.42

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