RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DIRC1Q969H9 104 aa10.43□□□□□ -0.74
CPSF1-212ENST00000616140 PSMB8P28062 276 aa10.43□□□□□ -0.74
CPSF1-212ENST00000616140 LINC00269Q8N2A0 174 aa10.43□□□□□ -0.74
CPSF1-212ENST00000616140 FAM222AQ5U5X8 452 aa10.42□□□□□ -0.74
CPSF1-212ENST00000616140 MT-ATP8P03928 68 aa10.42□□□□□ -0.74
CPSF1-212ENST00000616140 INSL3P51460 131 aa10.42□□□□□ -0.74
CPSF1-212ENST00000616140 Q6ZS46 218 aa10.42□□□□□ -0.74
CPSF1-212ENST00000616140 Q8N976 141 aa10.42□□□□□ -0.74
CPSF1-212ENST00000616140 PRORYQ9H606 182 aa10.42□□□□□ -0.74
CPSF1-212ENST00000616140 CDSNQ15517 529 aa10.41□□□□□ -0.74
CPSF1-212ENST00000616140 CFAP126Q5VTH2 177 aa10.41□□□□□ -0.74
CPSF1-212ENST00000616140 PIK3CD-AS1Q5SR53 167 aa10.41□□□□□ -0.74
CPSF1-212ENST00000616140 LINC00643Q86TS7 51 aa10.41□□□□□ -0.74
CPSF1-212ENST00000616140 TMEM256-PLSCR3K7ERE1 68 aa10.41□□□□□ -0.74
CPSF1-212ENST00000616140 A8MZ25 164 aa10.41□□□□□ -0.74
CPSF1-212ENST00000616140 Q6ZSV7 163 aa10.41□□□□□ -0.74
CPSF1-212ENST00000616140 EML5Q05BV3 1969 aa10.4□□□□□ -0.74
CPSF1-212ENST00000616140 TRBV6-5A0A0K0K1A5 114 aa10.4□□□□□ -0.74
CPSF1-212ENST00000616140 TIRAPP58753 221 aa10.4□□□□□ -0.74
CPSF1-212ENST00000616140 LINC00308Q8TCZ7 52 aa10.4□□□□□ -0.74
CPSF1-212ENST00000616140 TRIAP1O43715 76 aa10.4□□□□□ -0.74
CPSF1-212ENST00000616140 F8W735 103 aaPredicted RBP10.4□□□□□ -0.75
CPSF1-212ENST00000616140 POLR2KP53803 58 aaKnown RBP10.39□□□□□ -0.75
CPSF1-212ENST00000616140 KLLNB2CW77 178 aa10.39□□□□□ -0.75
CPSF1-212ENST00000616140 PRM2P04554 102 aa10.39□□□□□ -0.75
CPSF1-212ENST00000616140 RBX1P62877 108 aa10.39□□□□□ -0.75
CPSF1-212ENST00000616140 URB1-AS1Q96HZ7 61 aa10.39□□□□□ -0.75
CPSF1-212ENST00000616140 HIGD2BQ4VC39 106 aa10.39□□□□□ -0.75
CPSF1-212ENST00000616140 REG3AQ06141 175 aa10.38□□□□□ -0.75
CPSF1-212ENST00000616140 CNFNQ9BYD5 112 aa10.38□□□□□ -0.75
CPSF1-212ENST00000616140 PTPRSQ13332 1948 aa10.38□□□□□ -0.75
CPSF1-212ENST00000616140 NDUFS5O43920 106 aa10.37□□□□□ -0.75
CPSF1-212ENST00000616140 TMEM258P61165 79 aa10.37□□□□□ -0.75
CPSF1-212ENST00000616140 LRP4O75096 1905 aa10.37□□□□□ -0.75
CPSF1-212ENST00000616140 CRYGDP07320 174 aa10.37□□□□□ -0.75
CPSF1-212ENST00000616140 RNF183Q96D59 192 aa10.37□□□□□ -0.75
CPSF1-212ENST00000616140 TSHBP01222 138 aa10.36□□□□□ -0.75
CPSF1-212ENST00000616140 PYGO1Q9Y3Y4 419 aa10.36□□□□□ -0.75
CPSF1-212ENST00000616140 F8P00451 2351 aa10.36□□□□□ -0.75
CPSF1-212ENST00000616140 CHCHD10Q8WYQ3 142 aaPredicted RBP10.36□□□□□ -0.75
CPSF1-212ENST00000616140 LRRC75A-AS1Q8N1F1 130 aa10.35□□□□□ -0.75
CPSF1-212ENST00000616140 TRBV6-8A0A0A6YYG3 113 aa10.35□□□□□ -0.75
CPSF1-212ENST00000616140 MRPS12O15235 138 aaKnown RBP10.35□□□□□ -0.75
CPSF1-212ENST00000616140 PRB2P02812 416 aaPredicted RBP10.35□□□□□ -0.75
CPSF1-212ENST00000616140 UFSP1Q6NVU6 142 aa10.35□□□□□ -0.75
CPSF1-212ENST00000616140 DCANP1Q8TF63 244 aa10.35□□□□□ -0.75
CPSF1-212ENST00000616140 H3BQ85 93 aa10.35□□□□□ -0.75
CPSF1-212ENST00000616140 TRBV30A0A0K0K1B3 111 aa10.34□□□□□ -0.75
CPSF1-212ENST00000616140 IBA57-AS1B1ANH7 110 aa10.34□□□□□ -0.75
CPSF1-212ENST00000616140 SLPIP03973 132 aa10.34□□□□□ -0.75
CPSF1-212ENST00000616140 COX7BP24311 80 aa10.34□□□□□ -0.75
CPSF1-212ENST00000616140 LINC00482Q8N8I6 264 aa10.34□□□□□ -0.75
CPSF1-212ENST00000616140 NDUFV3P56181 108 aaKnown RBP10.34□□□□□ -0.75
CPSF1-212ENST00000616140 TRBV6-4A0A1B0GX49 114 aa10.33□□□□□ -0.76
CPSF1-212ENST00000616140 PSMG3-AS1Q96PY0 264 aa10.33□□□□□ -0.76
CPSF1-212ENST00000616140 TRAV23DV6A0A075B6W5 121 aa10.33□□□□□ -0.76
CPSF1-212ENST00000616140 IGLV1-40P01703 118 aa10.33□□□□□ -0.76
CPSF1-212ENST00000616140 XAGE1AQ9HD64 81 aa10.33□□□□□ -0.76
CPSF1-212ENST00000616140 ZNF702PQ9H963 129 aa10.33□□□□□ -0.76
CPSF1-212ENST00000616140 SMIM9A6NGZ8 99 aa10.32□□□□□ -0.76
CPSF1-212ENST00000616140 PDE6GP18545 87 aa10.32□□□□□ -0.76
CPSF1-212ENST00000616140 C18orf65Q6ZTR6 163 aa10.32□□□□□ -0.76
CPSF1-212ENST00000616140 AVPP01185 164 aa10.32□□□□□ -0.76
CPSF1-212ENST00000616140 C9orf85Q96MD7 179 aa10.32□□□□□ -0.76
CPSF1-212ENST00000616140 WFDC10AQ9H1F0 79 aa10.32□□□□□ -0.76
CPSF1-212ENST00000616140 LYRM9A8MSI8 78 aa10.32□□□□□ -0.76
CPSF1-212ENST00000616140 SDIM1Q6ZPB5 146 aa10.31□□□□□ -0.76
CPSF1-212ENST00000616140 IGKV2-24A0A0C4DH68 120 aa10.3□□□□□ -0.76
CPSF1-212ENST00000616140 H7C423 109 aa10.3□□□□□ -0.76
CPSF1-212ENST00000616140 NDUFB1O75438 58 aa10.3□□□□□ -0.76
CPSF1-212ENST00000616140 UBE2AP49459 152 aa10.3□□□□□ -0.76
CPSF1-212ENST00000616140 MP68P56378 58 aa10.3□□□□□ -0.76
CPSF1-212ENST00000616140 C6orf99Q4VX62 202 aa10.3□□□□□ -0.76
CPSF1-212ENST00000616140 J3KT08 172 aa10.29□□□□□ -0.76
CPSF1-212ENST00000616140 C11orf45Q8TAV5 145 aa10.29□□□□□ -0.76
CPSF1-212ENST00000616140 BBC3Q96PG8 261 aaPredicted RBP10.29□□□□□ -0.76
CPSF1-212ENST00000616140 AGRNO00468 2067 aa10.29□□□□□ -0.76
CPSF1-212ENST00000616140 LINC01006Q8NI28 216 aa10.29□□□□□ -0.76
CPSF1-212ENST00000616140 IGIPA6NJ69 53 aa10.28□□□□□ -0.76
CPSF1-212ENST00000616140 EDN2P20800 178 aa10.28□□□□□ -0.76
CPSF1-212ENST00000616140 UBE2D4Q9Y2X8 147 aa10.28□□□□□ -0.76
CPSF1-212ENST00000616140 LOC100131303A0A0U1RQF7 123 aa10.28□□□□□ -0.76
CPSF1-212ENST00000616140 INAFM1C9JVW0 142 aa10.28□□□□□ -0.76
CPSF1-212ENST00000616140 C20orf197Q8N268 126 aa10.28□□□□□ -0.76
CPSF1-212ENST00000616140 A0A1W2PPR1 153 aa10.27□□□□□ -0.76
CPSF1-212ENST00000616140 HIGD2AQ9BW72 106 aa10.27□□□□□ -0.76
CPSF1-212ENST00000616140 MUC4Q99102 2169 aa10.27□□□□□ -0.77
CPSF1-212ENST00000616140 LINC00526Q96FQ7 95 aa10.27□□□□□ -0.77
CPSF1-212ENST00000616140 UPK3BQ9BT76 320 aa10.27□□□□□ -0.77
CPSF1-212ENST00000616140 PKIGQ9Y2B9 76 aa10.27□□□□□ -0.77
CPSF1-212ENST00000616140 POM121L12Q8N7R1 296 aa10.26□□□□□ -0.77
CPSF1-212ENST00000616140 BPY2O14599 106 aa10.26□□□□□ -0.77
CPSF1-212ENST00000616140 TIMM17BO60830 172 aa10.26□□□□□ -0.77
CPSF1-212ENST00000616140 C5orf47Q569G3 176 aa10.26□□□□□ -0.77
CPSF1-212ENST00000616140 WFDC9Q8NEX5 89 aa10.26□□□□□ -0.77
CPSF1-212ENST00000616140 FAM110AQ9BQ89 295 aa10.25□□□□□ -0.77
CPSF1-212ENST00000616140 LST1O00453 97 aa10.25□□□□□ -0.77
CPSF1-212ENST00000616140 USP24Q9UPU5 2620 aa10.25□□□□□ -0.77
CPSF1-212ENST00000616140 A0A096LNJ9 63 aa10.25□□□□□ -0.77
CPSF1-212ENST00000616140 DEFB131BA0A096LNP1 70 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms