RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 DGAT2L7PQ6IED9 249 aa11.24□□□□□ -0.61
UPF1-204ENST00000596842 ACANP16112 2415 aa11.24□□□□□ -0.61
UPF1-204ENST00000596842 TMEM223A0PJW6 202 aa11.24□□□□□ -0.61
UPF1-204ENST00000596842 IGHV3-30-3P0DP02 117 aa11.24□□□□□ -0.61
UPF1-204ENST00000596842 APRG1Q8IVJ8 170 aa11.24□□□□□ -0.61
UPF1-204ENST00000596842 LEPROTO15243 131 aa11.23□□□□□ -0.61
UPF1-204ENST00000596842 NXPH4O95158 308 aa11.23□□□□□ -0.61
UPF1-204ENST00000596842 C9orf85Q96MD7 179 aa11.23□□□□□ -0.61
UPF1-204ENST00000596842 TRACP01848 142 aa11.23□□□□□ -0.61
UPF1-204ENST00000596842 PSMB8P28062 276 aa11.23□□□□□ -0.61
UPF1-204ENST00000596842 LINC01587Q99440 93 aa11.23□□□□□ -0.61
UPF1-204ENST00000596842 K7EQG2 157 aa11.22□□□□□ -0.61
UPF1-204ENST00000596842 M0R2P5 195 aa11.22□□□□□ -0.61
UPF1-204ENST00000596842 IGHV3-33P01772 117 aa11.22□□□□□ -0.61
UPF1-204ENST00000596842 RBMY1A1P0DJD3 496 aaKnown RBP11.22□□□□□ -0.61
UPF1-204ENST00000596842 RBMY1CP0DJD4 496 aa11.22□□□□□ -0.61
UPF1-204ENST00000596842 RBMY1FQ15415 496 aaKnown RBP11.22□□□□□ -0.61
UPF1-204ENST00000596842 A0A0U1RQV1 116 aa11.22□□□□□ -0.61
UPF1-204ENST00000596842 DSCR8Q96T75 97 aa11.22□□□□□ -0.61
UPF1-204ENST00000596842 NDUFA12Q9UI09 145 aa11.22□□□□□ -0.61
UPF1-204ENST00000596842 A0A0J9YXY3 114 aa11.21□□□□□ -0.61
UPF1-204ENST00000596842 K7EMT4 169 aa11.21□□□□□ -0.61
UPF1-204ENST00000596842 IGHV3-53P01767 116 aa11.21□□□□□ -0.61
UPF1-204ENST00000596842 AMELXQ99217 191 aa11.21□□□□□ -0.61
UPF1-204ENST00000596842 RNF152Q8N8N0 203 aa11.21□□□□□ -0.61
UPF1-204ENST00000596842 IGKV3D-7A0A0C4DH55 119 aa11.21□□□□□ -0.62
UPF1-204ENST00000596842 UBE2E2Q96LR5 201 aa11.21□□□□□ -0.62
UPF1-204ENST00000596842 PRB1P04280 392 aa11.2□□□□□ -0.62
UPF1-204ENST00000596842 RHOHQ15669 191 aa11.2□□□□□ -0.62
UPF1-204ENST00000596842 EIF4EBP3O60516 100 aaPredicted RBP11.2□□□□□ -0.62
UPF1-204ENST00000596842 CIRBPQ14011 172 aaKnown RBP11.2□□□□□ -0.62
UPF1-204ENST00000596842 NDUFA7O95182 113 aa11.2□□□□□ -0.62
UPF1-204ENST00000596842 NIPBLQ6KC79 2804 aaeCLIP11.2□□□□□ -0.626e-6■■■□□ 16.7
UPF1-204ENST00000596842 TRBV6-5A0A0K0K1A5 114 aa11.19□□□□□ -0.62
UPF1-204ENST00000596842 Q6ZSN1 163 aa11.19□□□□□ -0.62
UPF1-204ENST00000596842 XCL2Q9UBD3 114 aa11.19□□□□□ -0.62
UPF1-204ENST00000596842 A0A1W2PRX2 142 aa11.19□□□□□ -0.62
UPF1-204ENST00000596842 ADAMTSL4-AS1Q5T5F5 129 aa11.19□□□□□ -0.62
UPF1-204ENST00000596842 DYNLRB2Q8TF09 96 aa11.18□□□□□ -0.62
UPF1-204ENST00000596842 TMEM263Q8WUH6 116 aaKnown RBP11.18□□□□□ -0.62
UPF1-204ENST00000596842 IGKV3OR2-268A0A0C4DH90 116 aa11.18□□□□□ -0.62
UPF1-204ENST00000596842 POM121L12Q8N7R1 296 aa11.18□□□□□ -0.62
UPF1-204ENST00000596842 DNAJC30Q96LL9 226 aa11.18□□□□□ -0.62
UPF1-204ENST00000596842 TRIAP1O43715 76 aa11.17□□□□□ -0.62
UPF1-204ENST00000596842 CFHR3Q02985 330 aa11.17□□□□□ -0.62
UPF1-204ENST00000596842 A0A1B0GX51 115 aa11.17□□□□□ -0.62
UPF1-204ENST00000596842 TMEM61Q8N0U2 210 aa11.16□□□□□ -0.62
UPF1-204ENST00000596842 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.16□□□□□ -0.62
UPF1-204ENST00000596842 LINC00467Q9BRT7 94 aa11.16□□□□□ -0.62
UPF1-204ENST00000596842 C4orf26Q17RF5 130 aa11.14□□□□□ -0.63
UPF1-204ENST00000596842 C3orf22Q8N5N4 141 aa11.14□□□□□ -0.63
UPF1-204ENST00000596842 NOTCH2Q04721 2471 aa11.14□□□□□ -0.63
UPF1-204ENST00000596842 SPANXA1Q9NS26 97 aa11.14□□□□□ -0.63
UPF1-204ENST00000596842 CDKN2A-AS1Q9UH64 79 aa11.14□□□□□ -0.63
UPF1-204ENST00000596842 CITED2Q99967 270 aaPredicted RBP11.13□□□□□ -0.63
UPF1-204ENST00000596842 TRAV25A0A0B4J276 109 aa11.13□□□□□ -0.63
UPF1-204ENST00000596842 TRGV1A0A0A0MS02 117 aa11.13□□□□□ -0.63
UPF1-204ENST00000596842 DNAL4O96015 105 aa11.12□□□□□ -0.63
UPF1-204ENST00000596842 LINC01356Q8N9X3 169 aa11.12□□□□□ -0.63
UPF1-204ENST00000596842 ODF3Q96PU9 254 aa11.12□□□□□ -0.63
UPF1-204ENST00000596842 TRBV10-2A0A0K0K1G8 114 aa11.12□□□□□ -0.63
UPF1-204ENST00000596842 WFDC11Q8NEX6 87 aa11.12□□□□□ -0.63
UPF1-204ENST00000596842 IGHV1-58A0A0C4DH39 117 aa11.12□□□□□ -0.63
UPF1-204ENST00000596842 RBMY1BA6NDE4 496 aaKnown RBP11.12□□□□□ -0.63
UPF1-204ENST00000596842 RBMY1EA6NEQ0 496 aaKnown RBP11.12□□□□□ -0.63
UPF1-204ENST00000596842 RBMY1DP0C7P1 496 aaKnown RBP11.12□□□□□ -0.63
UPF1-204ENST00000596842 ICOSQ9Y6W8 199 aa11.12□□□□□ -0.63
UPF1-204ENST00000596842 SDIM1Q6ZPB5 146 aa11.11□□□□□ -0.63
UPF1-204ENST00000596842 KIR2DL5BQ8NHK3 375 aa11.11□□□□□ -0.63
UPF1-204ENST00000596842 ZNF415Q09FC8 603 aa11.11□□□□□ -0.63
UPF1-204ENST00000596842 A0A0B4J2C4 111 aa11.1□□□□□ -0.63
UPF1-204ENST00000596842 UQCRQO14949 82 aa11.1□□□□□ -0.63
UPF1-204ENST00000596842 HIVEP2P31629 2446 aa11.1□□□□□ -0.63
UPF1-204ENST00000596842 Q9H8V8 135 aa11.09□□□□□ -0.63
UPF1-204ENST00000596842 MRAPQ8TCY5 172 aa11.09□□□□□ -0.63
UPF1-204ENST00000596842 VSIG2Q96IQ7 327 aa11.09□□□□□ -0.63
UPF1-204ENST00000596842 TINCRA0A1B0GVN0 87 aa11.08□□□□□ -0.64
UPF1-204ENST00000596842 MRPS36P82909 103 aaKnown RBP11.08□□□□□ -0.64
UPF1-204ENST00000596842 PRORYQ9H606 182 aa11.08□□□□□ -0.64
UPF1-204ENST00000596842 UBE2D4Q9Y2X8 147 aa11.08□□□□□ -0.64
UPF1-204ENST00000596842 TOMM7Q9P0U1 55 aa11.08□□□□□ -0.64
UPF1-204ENST00000596842 S100A7L2Q5SY68 101 aa11.07□□□□□ -0.64
UPF1-204ENST00000596842 CHCHD7Q9BUK0 85 aa11.07□□□□□ -0.64
UPF1-204ENST00000596842 NBEAL2Q6ZNJ1 2754 aa11.07□□□□□ -0.64
UPF1-204ENST00000596842 COX6A2Q02221 97 aa11.07□□□□□ -0.64
UPF1-204ENST00000596842 PEMTQ9UBM1 199 aa11.07□□□□□ -0.64
UPF1-204ENST00000596842 ZNF702PQ9H963 129 aa11.07□□□□□ -0.64
UPF1-204ENST00000596842 MIAQ16674 131 aa11.06□□□□□ -0.64
UPF1-204ENST00000596842 FAM104AQ969W3 186 aa11.06□□□□□ -0.64
UPF1-204ENST00000596842 FLNAP21333 2647 aaKnown RBP11.06□□□□□ -0.64
UPF1-204ENST00000596842 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.06□□□□□ -0.64
UPF1-204ENST00000596842 BRK1Q8WUW1 75 aa11.06□□□□□ -0.64
UPF1-204ENST00000596842 MAP6D1Q9H9H5 199 aa11.06□□□□□ -0.64
UPF1-204ENST00000596842 PRIMA1Q86XR5 153 aa11.05□□□□□ -0.64
UPF1-204ENST00000596842 LITAFQ99732 161 aa11.05□□□□□ -0.64
UPF1-204ENST00000596842 H7C423 109 aa11.05□□□□□ -0.64
UPF1-204ENST00000596842 STHQ8IWL8 128 aa11.05□□□□□ -0.64
UPF1-204ENST00000596842 INSP01308 110 aa11.04□□□□□ -0.64
UPF1-204ENST00000596842 SBSPONQ8IVN8 264 aa11.04□□□□□ -0.64
UPF1-204ENST00000596842 PYGO1Q9Y3Y4 419 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms