RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 C11orf44Q8N8P7 122 aa7.66□□□□□ -1.18
ZNF540-208ENST00000589857 GEMIN7Q9H840 131 aaKnown RBP7.66□□□□□ -1.18
ZNF540-208ENST00000589857 UBE2D4Q9Y2X8 147 aa7.66□□□□□ -1.18
ZNF540-208ENST00000589857 IGHV3OR16-12A0A075B7B8 117 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 A0A0J9YXV3 536 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 H7C423 109 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 J3QR89 54 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 K7ERJ3 54 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 PF4P02776 101 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 INSL3P51460 131 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 UBE2D1P51668 147 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 EMP1P54849 157 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 KPRPQ5T749 579 aaPredicted RBP7.65□□□□□ -1.18
ZNF540-208ENST00000589857 CHCHD7Q9BUK0 85 aa7.65□□□□□ -1.18
ZNF540-208ENST00000589857 IGHV1-58A0A0C4DH39 117 aa7.64□□□□□ -1.19
ZNF540-208ENST00000589857 TIRAPP58753 221 aa7.64□□□□□ -1.19
ZNF540-208ENST00000589857 HERVK_113P63121 156 aa7.64□□□□□ -1.19
ZNF540-208ENST00000589857 COPS9Q8WXC6 57 aa7.64□□□□□ -1.19
ZNF540-208ENST00000589857 CSDC2Q9Y534 153 aaKnown RBP7.64□□□□□ -1.19
ZNF540-208ENST00000589857 TRBV20-1A0A075B6N2 111 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 G3V4G9 280 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 IGHV3-30P01768 117 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 IGHV3-30-5P0DP03 117 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 TMEM101Q96IK0 257 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 NAA38Q9BRA0 125 aaKnown RBP7.63□□□□□ -1.19
ZNF540-208ENST00000589857 OVOL2Q9BRP0 275 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 GTSF1LQ9H1H1 148 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 PGPEP1Q9NXJ5 209 aa7.63□□□□□ -1.19
ZNF540-208ENST00000589857 WNK1Q9H4A3 2382 aa7.62□□□□□ -1.19
ZNF540-208ENST00000589857 MUC4Q99102 2169 aa7.62□□□□□ -1.19
ZNF540-208ENST00000589857 TRBV6-4A0A1B0GX49 114 aa7.62□□□□□ -1.19
ZNF540-208ENST00000589857 UBE2L6O14933 153 aa7.62□□□□□ -1.19
ZNF540-208ENST00000589857 TIMM17BO60830 172 aa7.62□□□□□ -1.19
ZNF540-208ENST00000589857 KRTAP10-3P60369 221 aa7.62□□□□□ -1.19
ZNF540-208ENST00000589857 Q6ZSN1 163 aa7.62□□□□□ -1.19
ZNF540-208ENST00000589857 OPRPNQ99935 248 aaPredicted RBP7.62□□□□□ -1.19
ZNF540-208ENST00000589857 TRGV2A0A075B6R0 118 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.61□□□□□ -1.19
ZNF540-208ENST00000589857 A0A0B4J2C4 111 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 IGKV2-29A2NJV5 120 aaPredicted RBP7.61□□□□□ -1.19
ZNF540-208ENST00000589857 IGHV3-30-3P0DP02 117 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 TSPEAR-AS2P59090 65 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 UBE2D3P61077 147 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 UBE2D2P62837 147 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 GAGE13Q4V321 117 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 FAM19A3Q7Z5A8 133 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 DEFB104AQ8WTQ1 72 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 VPS25Q9BRG1 176 aa7.61□□□□□ -1.19
ZNF540-208ENST00000589857 PRKDCP78527 4128 aaKnown RBP7.61□□□□□ -1.19
ZNF540-208ENST00000589857 IGLV5-45A0A087WSX0 123 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 A0A0J9YXY3 114 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 SMIM9A6NGZ8 99 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 ADARB2-AS1A8MUL3 147 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 IFITM1P13164 125 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 RBX1P62877 108 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 CIRBPQ14011 172 aaKnown RBP7.6□□□□□ -1.19
ZNF540-208ENST00000589857 C9orf66Q5T8R8 295 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 Q6ZTI0 123 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 Q6ZUT4 128 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 C10orf126Q8N4M7 172 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 RNF183Q96D59 192 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 VSIG2Q96IQ7 327 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 TMEM243Q9BU79 118 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 SPANXDQ9BXN6 97 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 NOP10Q9NPE3 64 aaKnown RBP7.6□□□□□ -1.19
ZNF540-208ENST00000589857 SPANXCQ9NY87 97 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 PRO1854Q9UHT4 67 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 NDUFA12Q9UI09 145 aa7.6□□□□□ -1.19
ZNF540-208ENST00000589857 TRGV4A0A0C4DH28 118 aa7.59□□□□□ -1.19
ZNF540-208ENST00000589857 APOMO95445 188 aa7.59□□□□□ -1.19
ZNF540-208ENST00000589857 RPL35AP18077 110 aaKnown RBP7.59□□□□□ -1.19
ZNF540-208ENST00000589857 RNF151Q2KHN1 245 aa7.59□□□□□ -1.19
ZNF540-208ENST00000589857 ZFAND6Q6FIF0 208 aa7.59□□□□□ -1.19
ZNF540-208ENST00000589857 C19orf73Q9NVV2 129 aa7.59□□□□□ -1.19
ZNF540-208ENST00000589857 IGHV3-38A0A0C4DH36 116 aa7.58□□□□□ -1.2
ZNF540-208ENST00000589857 TSPAN13O95857 204 aa7.58□□□□□ -1.2
ZNF540-208ENST00000589857 PRM2P04554 102 aa7.58□□□□□ -1.2
ZNF540-208ENST00000589857 LINC00482Q8N8I6 264 aa7.58□□□□□ -1.2
ZNF540-208ENST00000589857 ERG28Q9UKR5 140 aa7.58□□□□□ -1.2
ZNF540-208ENST00000589857 LOC107984156A0A0G2JMH3 177 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 GAGE12JA6NER3 117 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 NDUFA1O15239 70 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 GAGE7O76087 117 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 PRB2P02812 416 aaPredicted RBP7.57□□□□□ -1.2
ZNF540-208ENST00000589857 GAGE12FP0CL80 117 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 GAGE12GP0CL81 117 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 GAGE12IP0CL82 117 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 GAGE4Q13068 117 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 GAGE5Q13069 117 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 MIAQ16674 131 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 ARL17AQ8IVW1 177 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 CSNK1G2-AS1Q8NCQ2 148 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 ATP6V0E2Q8NHE4 81 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 KIR2DL5BQ8NHK3 375 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 WWC2-AS2Q96NR7 200 aa7.57□□□□□ -1.2
ZNF540-208ENST00000589857 IGHV3-64A0A075B6Q5 118 aa7.56□□□□□ -1.2
ZNF540-208ENST00000589857 A4D1N5 150 aa7.56□□□□□ -1.2
ZNF540-208ENST00000589857 GIG44P09565 113 aaPredicted RBP7.56□□□□□ -1.2
ZNF540-208ENST00000589857 CFC1BP0CG36 223 aa7.56□□□□□ -1.2
ZNF540-208ENST00000589857 CFC1P0CG37 223 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms