RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 SFT2D2O95562 160 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 APOC3P02656 99 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 ZNF137PP52743 207 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 KRTAP10-4P60372 401 aaPredicted RBP0.69□□□□□ -2.3
CHD3-217ENST00000574022 C6orf52Q5T4I8 152 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 CFAP126Q5VTH2 177 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 SFTA2Q6UW10 78 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 AMELXQ99217 191 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 FAIMQ9NVQ4 179 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 SSC5DA1L4H1 1573 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 HMGXB3Q12766 1538 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 ZNF236Q9UL36 1845 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 COL6A6A6NMZ7 2263 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 GCHFRP30047 84 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 ASIPP42127 132 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 COX17Q14061 63 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 BAGE2Q86Y30 109 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 SMIM4Q8WVI0 70 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 PRR15LQ9BU68 103 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 NXT2Q9NPJ8 142 aaKnown RBP0.68□□□□□ -2.3
CHD3-217ENST00000574022 ARL2-SNX15V9GYD0 113 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 PI4KAP42356 2102 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 SBF2Q86WG5 1849 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 ABCC3O15438 1527 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 RGPD4Q7Z3J3 1758 aa0.68□□□□□ -2.3
CHD3-217ENST00000574022 NOTCH2Q04721 2471 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 ROS1P08922 2347 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 LRRC37A2A6NM11 1700 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 NUP188Q5SRE5 1749 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 A0A0G2JND7 137 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 TRBV7-7A0A0K0K1E9 115 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 PVALEFA0A1B0GWK0 134 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 GYPAP02724 150 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 IGLC1P0CG04 106 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 FAUP35544 74 aaKnown RBP0.67□□□□□ -2.3
CHD3-217ENST00000574022 SPINK9Q5DT21 86 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 Q6ZRX8 168 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 FAM223AQ8IWN6 122 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 C9orf62Q8N4C0 152 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 SERP2Q8N6R1 65 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 TRGV9Q99603 122 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 NPVFQ9HCQ7 196 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 CACFD1Q9UGQ2 172 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 LINC01558Q9Y6Z2 57 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 COL4A6Q14031 1691 aa0.67□□□□□ -2.3
CHD3-217ENST00000574022 MED13LQ71F56 2210 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 UQCRHLA0A096LP55 91 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 SYS1-DBNDD2H3BUS1 97 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 UQCRHP07919 91 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 SAA2P0DJI9 122 aaPredicted RBP0.66□□□□□ -2.3
CHD3-217ENST00000574022 RAPGEF6Q8TEU7 1601 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 DOCK11Q5JSL3 2073 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 FANCAO15360 1455 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 BTAF1O14981 1849 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 UNC13BO14795 1591 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 ABCA1O95477 2261 aa0.66□□□□□ -2.3
CHD3-217ENST00000574022 RGPD3A6NKT7 1758 aaPredicted RBP0.65□□□□□ -2.3
CHD3-217ENST00000574022 PDCD11Q14690 1871 aaKnown RBP0.65□□□□□ -2.3
CHD3-217ENST00000574022 EPRSP07814 1512 aaKnown RBP0.65□□□□□ -2.31
CHD3-217ENST00000574022 MYO3AQ8NEV4 1616 aa0.65□□□□□ -2.31
CHD3-217ENST00000574022 FAM223BA6NKX1 122 aa0.65□□□□□ -2.31
CHD3-217ENST00000574022 G3V318 75 aa0.65□□□□□ -2.31
CHD3-217ENST00000574022 MGPP08493 103 aa0.65□□□□□ -2.31
CHD3-217ENST00000574022 PMCHL1Q16048 86 aa0.65□□□□□ -2.31
CHD3-217ENST00000574022 ZDBF2Q9HCK1 2354 aa0.65□□□□□ -2.31
CHD3-217ENST00000574022 F5P12259 2224 aa0.65□□□□□ -2.31
CHD3-217ENST00000574022 HELZ2Q9BYK8 2649 aaKnown RBP0.65□□□□□ -2.31
CHD3-217ENST00000574022 CEP162Q5TB80 1403 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 MUC6Q6W4X9 2439 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 TRBV25-1A0A075B6N4 114 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 A0A1B0GWA3 101 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 H7BZZ5 65 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 M0R3E3 92 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 PIN1P1O15428 100 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 PSMG4Q5JS54 123 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 KRTAP5-4Q6L8H1 288 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 KRTAP4-4Q9BYR3 166 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 PRO1933Q9H354 126 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 PROK2Q9HC23 129 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 MED14O60244 1454 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 ATP10BO94823 1461 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 CCDC18Q5T9S5 1454 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 ABCC2Q92887 1545 aa0.64□□□□□ -2.31
CHD3-217ENST00000574022 PPLO60437 1756 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 KDM3BQ7LBC6 1761 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 NLRP1Q9C000 1473 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 A0A0D9SG42 100 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 K7EP34 96 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 NMBP08949 121 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 UBE2DNLQ8IWF7 75 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 C20orf78Q9BR46 151 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 LINC00472Q9H8W2 130 aa0.63□□□□□ -2.31
CHD3-217ENST00000574022 NRXN1Q9ULB1 1477 aa0.62□□□□□ -2.31
CHD3-217ENST00000574022 WNK3Q9BYP7 1800 aa0.62□□□□□ -2.31
CHD3-217ENST00000574022 UBR1Q8IWV7 1749 aa0.62□□□□□ -2.31
CHD3-217ENST00000574022 ZNF815PA8K554 130 aa0.62□□□□□ -2.31
CHD3-217ENST00000574022 C10orf142B7Z368 130 aa0.62□□□□□ -2.31
CHD3-217ENST00000574022 HAMPP81172 84 aa0.62□□□□□ -2.31
CHD3-217ENST00000574022 PYY3Q5JQD4 70 aa0.62□□□□□ -2.31
CHD3-217ENST00000574022 Q6JHZ5 121 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms