RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 CIRBPQ14011 172 aaKnown RBP11.28□□□□□ -0.6
NUP88-207ENST00000573584 CENPEQ02224 2701 aa11.28□□□□□ -0.6
NUP88-207ENST00000573584 H3BT86 120 aa11.27□□□□□ -0.6
NUP88-207ENST00000573584 IGHV3OR16-12A0A075B7B8 117 aa11.27□□□□□ -0.61
NUP88-207ENST00000573584 LST1O00453 97 aa11.27□□□□□ -0.61
NUP88-207ENST00000573584 XCL2Q9UBD3 114 aa11.27□□□□□ -0.61
NUP88-207ENST00000573584 FBN2P35556 2912 aa11.26□□□□□ -0.61
NUP88-207ENST00000573584 DEFB114Q30KQ6 69 aa11.26□□□□□ -0.61
NUP88-207ENST00000573584 IGSF10Q6WRI0 2623 aa11.26□□□□□ -0.61
NUP88-207ENST00000573584 HIST2H2BDQ6DRA6 164 aa11.25□□□□□ -0.61
NUP88-207ENST00000573584 C4orf3Q8WVX3 66 aa11.25□□□□□ -0.61
NUP88-207ENST00000573584 Q9H8V8 135 aa11.25□□□□□ -0.61
NUP88-207ENST00000573584 IGHV4-31P0DP07 118 aa11.25□□□□□ -0.61
NUP88-207ENST00000573584 LINC00242Q5T6M2 205 aa11.25□□□□□ -0.61
NUP88-207ENST00000573584 ZNF625Q96I27 306 aaPredicted RBP11.25□□□□□ -0.61
NUP88-207ENST00000573584 HERVK_113P63121 156 aa11.25□□□□□ -0.61
NUP88-207ENST00000573584 CITED2Q99967 270 aaPredicted RBP11.25□□□□□ -0.61
NUP88-207ENST00000573584 MYO9AB2RTY4 2548 aa11.24□□□□□ -0.61
NUP88-207ENST00000573584 A0A0U1RRA0 63 aa11.24□□□□□ -0.61
NUP88-207ENST00000573584 Q8N2B8 174 aa11.24□□□□□ -0.61
NUP88-207ENST00000573584 LINC00308Q8TCZ7 52 aa11.24□□□□□ -0.61
NUP88-207ENST00000573584 ACACBO00763 2458 aa11.24□□□□□ -0.61
NUP88-207ENST00000573584 TRGV1A0A0A0MS02 117 aa11.23□□□□□ -0.61
NUP88-207ENST00000573584 LINC00694P0DN24 101 aa11.23□□□□□ -0.61
NUP88-207ENST00000573584 C15orf53Q8NAA6 179 aa11.23□□□□□ -0.61
NUP88-207ENST00000573584 IGLV5-39A0A0G2JS06 123 aa11.23□□□□□ -0.61
NUP88-207ENST00000573584 NDUFA7O95182 113 aa11.23□□□□□ -0.61
NUP88-207ENST00000573584 TRAV13-1A0A0B4J241 112 aa11.22□□□□□ -0.61
NUP88-207ENST00000573584 TEX15Q9BXT5 2789 aa11.22□□□□□ -0.61
NUP88-207ENST00000573584 PIEZO1Q92508 2521 aa11.22□□□□□ -0.61
NUP88-207ENST00000573584 NHLRC4P0CG21 123 aaPredicted RBP11.22□□□□□ -0.61
NUP88-207ENST00000573584 NDUFV3P56181 108 aaKnown RBP11.22□□□□□ -0.61
NUP88-207ENST00000573584 TTC32Q5I0X7 151 aa11.21□□□□□ -0.61
NUP88-207ENST00000573584 ODF3L2Q3SX64 289 aa11.21□□□□□ -0.62
NUP88-207ENST00000573584 STHQ8IWL8 128 aa11.21□□□□□ -0.62
NUP88-207ENST00000573584 C1orf158Q8N1D5 194 aa11.21□□□□□ -0.62
NUP88-207ENST00000573584 CACNA1AO00555 2505 aa11.2□□□□□ -0.62
NUP88-207ENST00000573584 SMIM1B2RUZ4 78 aa11.2□□□□□ -0.62
NUP88-207ENST00000573584 RPL36AP83881 106 aaKnown RBP11.2□□□□□ -0.62
NUP88-207ENST00000573584 RPL36ALQ969Q0 106 aaKnown RBP11.2□□□□□ -0.62
NUP88-207ENST00000573584 Q6Q795 121 aa11.19□□□□□ -0.62
NUP88-207ENST00000573584 FAM208BQ5VWN6 2430 aa11.19□□□□□ -0.62
NUP88-207ENST00000573584 GAGE5Q13069 117 aa11.19□□□□□ -0.62
NUP88-207ENST00000573584 GAGE6Q13070 117 aa11.19□□□□□ -0.62
NUP88-207ENST00000573584 NTM-AS1Q6ZSK4 140 aa11.19□□□□□ -0.62
NUP88-207ENST00000573584 PRIMA1Q86XR5 153 aa11.19□□□□□ -0.62
NUP88-207ENST00000573584 DEFB121Q5J5C9 76 aa11.19□□□□□ -0.62
NUP88-207ENST00000573584 CSDC2Q9Y534 153 aaKnown RBP11.19□□□□□ -0.62
NUP88-207ENST00000573584 CHD6Q8TD26 2715 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 K7EQD1 137 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 MEIG1Q5JSS6 88 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 SOSTDC1Q6X4U4 206 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 FAM19A3Q7Z5A8 133 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 COPS9Q8WXC6 57 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 DAZ2Q13117 558 aaKnown RBP11.18□□□□□ -0.62
NUP88-207ENST00000573584 Q6ZTI0 123 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 DAZ4Q86SG3 579 aaKnown RBP11.18□□□□□ -0.62
NUP88-207ENST00000573584 DAZ3Q9NR90 486 aaKnown RBP11.18□□□□□ -0.62
NUP88-207ENST00000573584 CUBNO60494 3623 aa11.18□□□□□ -0.62
NUP88-207ENST00000573584 TRBV10-1A0A0K0K1A3 114 aa11.17□□□□□ -0.62
NUP88-207ENST00000573584 IL17DQ8TAD2 202 aa11.17□□□□□ -0.62
NUP88-207ENST00000573584 FAM240AA0A1B0GVK7 77 aa11.17□□□□□ -0.62
NUP88-207ENST00000573584 COX7A2LO14548 114 aa11.16□□□□□ -0.62
NUP88-207ENST00000573584 CDC42SE2Q9NRR3 84 aa11.16□□□□□ -0.62
NUP88-207ENST00000573584 GAGE12JA6NER3 117 aa11.16□□□□□ -0.62
NUP88-207ENST00000573584 GAGE4Q13068 117 aa11.16□□□□□ -0.62
NUP88-207ENST00000573584 PTPN13Q12923 2485 aa11.16□□□□□ -0.62
NUP88-207ENST00000573584 MRPL23Q16540 153 aaKnown RBP11.15□□□□□ -0.62
NUP88-207ENST00000573584 SHISA2Q6UWI4 295 aa11.15□□□□□ -0.62
NUP88-207ENST00000573584 NAV2Q8IVL1 2488 aa11.15□□□□□ -0.62
NUP88-207ENST00000573584 B5MCH6 92 aa11.15□□□□□ -0.63
NUP88-207ENST00000573584 F5H768 121 aa11.15□□□□□ -0.63
NUP88-207ENST00000573584 LRRK2Q5S007 2527 aa11.14□□□□□ -0.63
NUP88-207ENST00000573584 TRAV25A0A0B4J276 109 aa11.14□□□□□ -0.63
NUP88-207ENST00000573584 KRTAP10-9P60411 292 aa11.14□□□□□ -0.63
NUP88-207ENST00000573584 C11orf44Q8N8P7 122 aa11.14□□□□□ -0.63
NUP88-207ENST00000573584 CR1P17927 2039 aa11.13□□□□□ -0.63
NUP88-207ENST00000573584 A0A1W2PRX2 142 aa11.13□□□□□ -0.63
NUP88-207ENST00000573584 HERV-K104P63124 156 aa11.13□□□□□ -0.63
NUP88-207ENST00000573584 NOP10Q9NPE3 64 aaKnown RBP11.13□□□□□ -0.63
NUP88-207ENST00000573584 ABCA12Q86UK0 2595 aa11.13□□□□□ -0.63
NUP88-207ENST00000573584 UBE2L6O14933 153 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 GAGE7O76087 117 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 GAGE12FP0CL80 117 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 GAGE12GP0CL81 117 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 GAGE12IP0CL82 117 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 C2CD3Q4AC94 2353 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 SS18L2Q9UHA2 77 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 EPG5Q9HCE0 2579 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 AKAP9Q99996 3911 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 Q96MF0 132 aa11.12□□□□□ -0.63
NUP88-207ENST00000573584 NOTCH3Q9UM47 2321 aa11.11□□□□□ -0.63
NUP88-207ENST00000573584 TMEM243Q9BU79 118 aa11.11□□□□□ -0.63
NUP88-207ENST00000573584 WNK1Q9H4A3 2382 aa11.11□□□□□ -0.63
NUP88-207ENST00000573584 CCDC179H3BU77 68 aa11.11□□□□□ -0.63
NUP88-207ENST00000573584 DEFB113Q30KQ7 82 aa11.1□□□□□ -0.63
NUP88-207ENST00000573584 TLN2Q9Y4G6 2542 aa11.1□□□□□ -0.63
NUP88-207ENST00000573584 CCL24O00175 119 aa11.09□□□□□ -0.63
NUP88-207ENST00000573584 PRB1P04280 392 aa11.09□□□□□ -0.63
NUP88-207ENST00000573584 ZNF462Q96JM2 2506 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms