RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 OTOGLQ3ZCN5 2332 aa11.29□□□□□ -0.6
CIITA-204ENST00000570546 EDN2P20800 178 aa11.29□□□□□ -0.6
CIITA-204ENST00000570546 DSCAML1Q8TD84 2053 aa11.29□□□□□ -0.6
CIITA-204ENST00000570546 SPATA25Q9BR10 227 aa11.29□□□□□ -0.6
CIITA-204ENST00000570546 J3KT08 172 aa11.29□□□□□ -0.6
CIITA-204ENST00000570546 COX7BP24311 80 aa11.29□□□□□ -0.6
CIITA-204ENST00000570546 SMIM9A6NGZ8 99 aa11.28□□□□□ -0.6
CIITA-204ENST00000570546 LYRM9A8MSI8 78 aa11.28□□□□□ -0.6
CIITA-204ENST00000570546 TMEM258P61165 79 aa11.28□□□□□ -0.6
CIITA-204ENST00000570546 FAM208BQ5VWN6 2430 aa11.28□□□□□ -0.6
CIITA-204ENST00000570546 SLPIP03973 132 aa11.27□□□□□ -0.61
CIITA-204ENST00000570546 UBE2D1P51668 147 aa11.27□□□□□ -0.61
CIITA-204ENST00000570546 MRPS36P82909 103 aaKnown RBP11.27□□□□□ -0.61
CIITA-204ENST00000570546 NAV3Q8IVL0 2385 aa11.26□□□□□ -0.61
CIITA-204ENST00000570546 PDE6GP18545 87 aa11.26□□□□□ -0.61
CIITA-204ENST00000570546 CRIP2P52943 208 aaPredicted RBP11.26□□□□□ -0.61
CIITA-204ENST00000570546 HIGD2BQ4VC39 106 aa11.26□□□□□ -0.61
CIITA-204ENST00000570546 SDIM1Q6ZPB5 146 aa11.26□□□□□ -0.61
CIITA-204ENST00000570546 RAI1Q7Z5J4 1906 aaPredicted RBP11.26□□□□□ -0.61
CIITA-204ENST00000570546 IGLV4-69A0A075B6H9 119 aa11.26□□□□□ -0.61
CIITA-204ENST00000570546 LST1O00453 97 aa11.25□□□□□ -0.61
CIITA-204ENST00000570546 AVPP01185 164 aa11.24□□□□□ -0.61
CIITA-204ENST00000570546 BDP1A6H8Y1 2624 aa11.24□□□□□ -0.61
CIITA-204ENST00000570546 UPK3BQ9BT76 320 aa11.23□□□□□ -0.61
CIITA-204ENST00000570546 IGLV2-18A0A075B6J9 118 aa11.23□□□□□ -0.61
CIITA-204ENST00000570546 LOC100131303A0A0U1RQF7 123 aa11.23□□□□□ -0.61
CIITA-204ENST00000570546 TRAV23DV6A0A075B6W5 121 aa11.22□□□□□ -0.61
CIITA-204ENST00000570546 XGP55808 180 aa11.22□□□□□ -0.61
CIITA-204ENST00000570546 POM121L12Q8N7R1 296 aa11.22□□□□□ -0.61
CIITA-204ENST00000570546 PKIGQ9Y2B9 76 aa11.21□□□□□ -0.61
CIITA-204ENST00000570546 ARHGAP32A7KAX9 2087 aa11.21□□□□□ -0.61
CIITA-204ENST00000570546 SPG11Q96JI7 2443 aa11.21□□□□□ -0.61
CIITA-204ENST00000570546 COL4A2P08572 1712 aa11.21□□□□□ -0.62
CIITA-204ENST00000570546 UQCRQO14949 82 aa11.21□□□□□ -0.62
CIITA-204ENST00000570546 TSPEAR-AS2P59090 65 aa11.2□□□□□ -0.62
CIITA-204ENST00000570546 LINC00482Q8N8I6 264 aa11.2□□□□□ -0.62
CIITA-204ENST00000570546 WFDC10AQ9H1F0 79 aa11.2□□□□□ -0.62
CIITA-204ENST00000570546 PTPRQQ9UMZ3 2332 aa11.2□□□□□ -0.62
CIITA-204ENST00000570546 NDUFS5O43920 106 aa11.2□□□□□ -0.62
CIITA-204ENST00000570546 BBC3Q96PG8 261 aaPredicted RBP11.2□□□□□ -0.62
CIITA-204ENST00000570546 A0A1W2PPR1 153 aa11.19□□□□□ -0.62
CIITA-204ENST00000570546 UBE2D3P61077 147 aa11.18□□□□□ -0.62
CIITA-204ENST00000570546 UBE2D2P62837 147 aa11.18□□□□□ -0.62
CIITA-204ENST00000570546 ADAMTS20P59510 1910 aa11.18□□□□□ -0.62
CIITA-204ENST00000570546 C3orf22Q8N5N4 141 aa11.17□□□□□ -0.62
CIITA-204ENST00000570546 LINC00959A0A1B0GUT2 108 aa11.17□□□□□ -0.62
CIITA-204ENST00000570546 BRI3O95415 125 aa11.17□□□□□ -0.62
CIITA-204ENST00000570546 CDC42SE2Q9NRR3 84 aa11.17□□□□□ -0.62
CIITA-204ENST00000570546 ZNF843Q8N446 348 aa11.17□□□□□ -0.62
CIITA-204ENST00000570546 LINC01006Q8NI28 216 aa11.17□□□□□ -0.62
CIITA-204ENST00000570546 ATP5EP2Q5VTU8 51 aa11.17□□□□□ -0.62
CIITA-204ENST00000570546 C6orf99Q4VX62 202 aa11.16□□□□□ -0.62
CIITA-204ENST00000570546 SMIM11BQ8TCY0 68 aa11.16□□□□□ -0.62
CIITA-204ENST00000570546 CHCHD7Q9BUK0 85 aa11.16□□□□□ -0.62
CIITA-204ENST00000570546 ENHOQ6UWT2 76 aa11.16□□□□□ -0.62
CIITA-204ENST00000570546 C11orf45Q8TAV5 145 aa11.16□□□□□ -0.62
CIITA-204ENST00000570546 MIFP14174 115 aa11.15□□□□□ -0.62
CIITA-204ENST00000570546 LINC00242Q5T6M2 205 aa11.15□□□□□ -0.62
CIITA-204ENST00000570546 MP68P56378 58 aa11.15□□□□□ -0.62
CIITA-204ENST00000570546 CD164L2Q6UWJ8 174 aa11.15□□□□□ -0.62
CIITA-204ENST00000570546 UBE2AP49459 152 aa11.15□□□□□ -0.63
CIITA-204ENST00000570546 XAGE1AQ9HD64 81 aa11.14□□□□□ -0.63
CIITA-204ENST00000570546 WDR87Q6ZQQ6 2873 aa11.14□□□□□ -0.63
CIITA-204ENST00000570546 IMUPQ9GZP8 106 aa11.13□□□□□ -0.63
CIITA-204ENST00000570546 NDUFA7O95182 113 aa11.13□□□□□ -0.63
CIITA-204ENST00000570546 ODF3L2Q3SX64 289 aa11.13□□□□□ -0.63
CIITA-204ENST00000570546 BPY2O14599 106 aa11.12□□□□□ -0.63
CIITA-204ENST00000570546 TET2Q6N021 2002 aaPredicted RBP11.12□□□□□ -0.63
CIITA-204ENST00000570546 NDUFB1O75438 58 aa11.12□□□□□ -0.63
CIITA-204ENST00000570546 FAM110AQ9BQ89 295 aa11.12□□□□□ -0.63
CIITA-204ENST00000570546 LINC01546A6NGU7 62 aa11.12□□□□□ -0.63
CIITA-204ENST00000570546 AMELXQ99217 191 aa11.12□□□□□ -0.63
CIITA-204ENST00000570546 INAFM1C9JVW0 142 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 COX6A2Q02221 97 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 C20orf197Q8N268 126 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 WFDC9Q8NEX5 89 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 SMIM1B2RUZ4 78 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 ACACBO00763 2458 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 ZNF580Q9UK33 172 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 CUL9Q8IWT3 2517 aa11.11□□□□□ -0.63
CIITA-204ENST00000570546 SCXQ7RTU7 201 aa11.1□□□□□ -0.63
CIITA-204ENST00000570546 PRB2P02812 416 aaPredicted RBP11.1□□□□□ -0.63
CIITA-204ENST00000570546 ADAMTSL4-AS1Q5T5F5 129 aa11.1□□□□□ -0.63
CIITA-204ENST00000570546 CCDC179H3BU77 68 aa11.1□□□□□ -0.63
CIITA-204ENST00000570546 ATRXP46100 2492 aa11.1□□□□□ -0.63
CIITA-204ENST00000570546 DEFB131BA0A096LNP1 70 aa11.09□□□□□ -0.63
CIITA-204ENST00000570546 LINC00526Q96FQ7 95 aa11.09□□□□□ -0.63
CIITA-204ENST00000570546 Q8IZM0 81 aa11.08□□□□□ -0.64
CIITA-204ENST00000570546 LINC00694P0DN24 101 aa11.08□□□□□ -0.64
CIITA-204ENST00000570546 NOTCH2Q04721 2471 aa11.07□□□□□ -0.64
CIITA-204ENST00000570546 CSPG4Q6UVK1 2322 aa11.07□□□□□ -0.64
CIITA-204ENST00000570546 COX17Q14061 63 aa11.07□□□□□ -0.64
CIITA-204ENST00000570546 Q6ZSN1 163 aa11.07□□□□□ -0.64
CIITA-204ENST00000570546 IGKV2-24A0A0C4DH68 120 aa11.06□□□□□ -0.64
CIITA-204ENST00000570546 LELP1Q5T871 98 aa11.06□□□□□ -0.64
CIITA-204ENST00000570546 C1orf158Q8N1D5 194 aa11.06□□□□□ -0.64
CIITA-204ENST00000570546 FAM240AA0A1B0GVK7 77 aa11.06□□□□□ -0.64
CIITA-204ENST00000570546 HILS1P60008 231 aa11.06□□□□□ -0.64
CIITA-204ENST00000570546 Q6Q795 121 aa11.06□□□□□ -0.64
CIITA-204ENST00000570546 PIEZO2Q9H5I5 2752 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms