RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 FAM231CP0DMU5 169 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 SBSPONQ8IVN8 264 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 C20orf203Q8NBC4 194 aa9.74□□□□□ -0.85
VPS4A-204ENST00000566354 I3L3M4 83 aa9.73□□□□□ -0.85
VPS4A-204ENST00000566354 K7EQG2 157 aa9.73□□□□□ -0.85
VPS4A-204ENST00000566354 RNASE1P07998 156 aaKnown RBP9.73□□□□□ -0.85
VPS4A-204ENST00000566354 C2CD3Q4AC94 2353 aa9.73□□□□□ -0.85
VPS4A-204ENST00000566354 IGKV3-20P01619 116 aa9.73□□□□□ -0.85
VPS4A-204ENST00000566354 SCGB1C2P0DMR2 95 aa9.73□□□□□ -0.85
VPS4A-204ENST00000566354 RNF152Q8N8N0 203 aa9.73□□□□□ -0.85
VPS4A-204ENST00000566354 DUX3Q96PT4 197 aa9.73□□□□□ -0.85
VPS4A-204ENST00000566354 OPRPNQ99935 248 aaPredicted RBP9.73□□□□□ -0.85
VPS4A-204ENST00000566354 TMEM89A2RUT3 159 aa9.72□□□□□ -0.85
VPS4A-204ENST00000566354 A8MWV9 139 aa9.72□□□□□ -0.85
VPS4A-204ENST00000566354 TMEM101Q96IK0 257 aa9.72□□□□□ -0.85
VPS4A-204ENST00000566354 ZNF22P17026 224 aaPredicted RBP9.72□□□□□ -0.85
VPS4A-204ENST00000566354 SPINK13Q1W4C9 94 aa9.72□□□□□ -0.85
VPS4A-204ENST00000566354 CARD19Q96LW7 228 aa9.71□□□□□ -0.85
VPS4A-204ENST00000566354 FHL3Q13643 280 aa9.71□□□□□ -0.86
VPS4A-204ENST00000566354 HIST2H2BDQ6DRA6 164 aa9.71□□□□□ -0.86
VPS4A-204ENST00000566354 TRGV11A0A075B6L2 103 aa9.7□□□□□ -0.86
VPS4A-204ENST00000566354 CRLF1O75462 422 aa9.7□□□□□ -0.86
VPS4A-204ENST00000566354 IGLV4-3A0A075B6K6 122 aa9.7□□□□□ -0.86
VPS4A-204ENST00000566354 A0A0B4J2C4 111 aa9.7□□□□□ -0.86
VPS4A-204ENST00000566354 TMEM263Q8WUH6 116 aaKnown RBP9.7□□□□□ -0.86
VPS4A-204ENST00000566354 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.69□□□□□ -0.86
VPS4A-204ENST00000566354 A0A0J9YXV3 536 aa9.69□□□□□ -0.86
VPS4A-204ENST00000566354 IGHV3-33P01772 117 aa9.69□□□□□ -0.86
VPS4A-204ENST00000566354 ELANEP08246 267 aa9.69□□□□□ -0.86
VPS4A-204ENST00000566354 SEC61GP60059 68 aa9.69□□□□□ -0.86
VPS4A-204ENST00000566354 EDA2RQ9HAV5 297 aa9.69□□□□□ -0.86
VPS4A-204ENST00000566354 PYGO1Q9Y3Y4 419 aa9.69□□□□□ -0.86
VPS4A-204ENST00000566354 TRAV2A0A0B4J234 112 aa9.68□□□□□ -0.86
VPS4A-204ENST00000566354 LINC00694P0DN24 101 aa9.68□□□□□ -0.86
VPS4A-204ENST00000566354 MUSTN1Q8IVN3 82 aa9.68□□□□□ -0.86
VPS4A-204ENST00000566354 LINC01006Q8NI28 216 aa9.68□□□□□ -0.86
VPS4A-204ENST00000566354 M0R2P5 195 aa9.67□□□□□ -0.86
VPS4A-204ENST00000566354 RS1O15537 224 aa9.67□□□□□ -0.86
VPS4A-204ENST00000566354 SYNJ2BPP57105 145 aa9.67□□□□□ -0.86
VPS4A-204ENST00000566354 IGHV3-64A0A075B6Q5 118 aa9.67□□□□□ -0.86
VPS4A-204ENST00000566354 EIF4EBP3O60516 100 aaPredicted RBP9.67□□□□□ -0.86
VPS4A-204ENST00000566354 ANKRD29Q8N6D5 301 aa9.67□□□□□ -0.86
VPS4A-204ENST00000566354 A0A0J9YXY3 114 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 SLC25A20O43772 301 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 NDUFA7O95182 113 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 ATP5G1P05496 136 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 C18orf65Q6ZTR6 163 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 C11orf44Q8N8P7 122 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 IGHV3-30-3P0DP02 117 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 MRPS36P82909 103 aaKnown RBP9.66□□□□□ -0.86
VPS4A-204ENST00000566354 C16orf95Q9H693 158 aa9.66□□□□□ -0.86
VPS4A-204ENST00000566354 CD28P10747 220 aa9.65□□□□□ -0.86
VPS4A-204ENST00000566354 UBE2E2Q96LR5 201 aa9.65□□□□□ -0.86
VPS4A-204ENST00000566354 TIMM21Q9BVV7 248 aa9.65□□□□□ -0.86
VPS4A-204ENST00000566354 KHDC1LQ5JSQ8 128 aa9.65□□□□□ -0.87
VPS4A-204ENST00000566354 PRO0628Q9UI54 55 aa9.65□□□□□ -0.87
VPS4A-204ENST00000566354 WNK1Q9H4A3 2382 aa9.64□□□□□ -0.87
VPS4A-204ENST00000566354 LINC01600Q96MT4 127 aa9.64□□□□□ -0.87
VPS4A-204ENST00000566354 H7C2G1 150 aa9.64□□□□□ -0.87
VPS4A-204ENST00000566354 ATXN8Q156A1 80 aa9.64□□□□□ -0.87
VPS4A-204ENST00000566354 DEFB136Q30KP8 78 aa9.64□□□□□ -0.87
VPS4A-204ENST00000566354 FAM104AQ969W3 186 aa9.64□□□□□ -0.87
VPS4A-204ENST00000566354 HOXD3P31249 432 aaPredicted RBP9.63□□□□□ -0.87
VPS4A-204ENST00000566354 Q1RN00 199 aa9.63□□□□□ -0.87
VPS4A-204ENST00000566354 ATRQ13535 2644 aa9.63□□□□□ -0.87
VPS4A-204ENST00000566354 TENM1Q9UKZ4 2725 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 IGHV1-58A0A0C4DH39 117 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 TRBV30A0A0K0K1B3 111 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 RBMY1A1P0DJD3 496 aaKnown RBP9.62□□□□□ -0.87
VPS4A-204ENST00000566354 RBMY1CP0DJD4 496 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 MALP21145 153 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 RBMY1FQ15415 496 aaKnown RBP9.62□□□□□ -0.87
VPS4A-204ENST00000566354 PIK3CD-AS1Q5SR53 167 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 IMUPQ9GZP8 106 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 IGHV3-73A0A0B4J1V6 119 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 UQCRQO14949 82 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 HTN1P15515 57 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 LITAFQ99732 161 aa9.62□□□□□ -0.87
VPS4A-204ENST00000566354 C3orf22Q8N5N4 141 aa9.61□□□□□ -0.87
VPS4A-204ENST00000566354 LINC00526Q96FQ7 95 aa9.61□□□□□ -0.87
VPS4A-204ENST00000566354 TINCRA0A1B0GVN0 87 aa9.61□□□□□ -0.87
VPS4A-204ENST00000566354 PROK1P58294 105 aa9.61□□□□□ -0.87
VPS4A-204ENST00000566354 A0A1W2PRX2 142 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 A8MTW9 85 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 ADARB2-AS1A8MUL3 147 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 PRSS2P07478 247 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 LINC01620Q4KN68 170 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 CEMP1Q6PRD7 247 aaPredicted RBP9.6□□□□□ -0.87
VPS4A-204ENST00000566354 NDUFA12Q9UI09 145 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 TRAV8-3A0A0A6YYJ7 113 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 KNCNA6PVL3 124 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 C4orf3Q8WVX3 66 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 VSIG2Q96IQ7 327 aa9.6□□□□□ -0.87
VPS4A-204ENST00000566354 TRAV4A0A0B4J268 109 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 TRBV7-7A0A0K0K1E9 115 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 SORL1Q92673 2214 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 H3BMM0 161 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 SLURP1P55000 103 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 DEFB131AP59861 70 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 HERVK_113P63121 156 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms