RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 LINC01558Q9Y6Z2 57 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 FASNP49327 2511 aaKnown RBP0.4□□□□□ -2.35
VPS13C-207ENST00000558919 GOLGA3Q08378 1498 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 ABCA12Q86UK0 2595 aa0.4□□□□□ -2.35
VPS13C-207ENST00000558919 JMJD1CQ15652 2540 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 ZNF609O15014 1411 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 VWFP04275 2813 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 CICQ96RK0 1608 aaPredicted RBP0.39□□□□□ -2.35
VPS13C-207ENST00000558919 CRYM-AS1A6NIL9 109 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 ZNF815PA8K554 130 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 SFT2D2O95562 160 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 COX6CP09669 75 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 TRAPPC2P0DI81 140 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 TRAPPC2BP0DI82 140 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 S100A3P33764 101 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 S100A10P60903 97 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 HAMPP81172 84 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 Q0VG73 95 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 ACBD7Q8N6N7 88 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 FAIMQ9NVQ4 179 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 FAM208BQ5VWN6 2430 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 SSC5DA1L4H1 1573 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 QRICH2Q9H0J4 1663 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 MUC22E2RYF6 1773 aaPredicted RBP0.39□□□□□ -2.35
VPS13C-207ENST00000558919 LAMB1P07942 1786 aa0.39□□□□□ -2.35
VPS13C-207ENST00000558919 CLASP1Q7Z460 1538 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 BCORL1Q5H9F3 1711 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 NRXN2Q9P2S2 1712 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 SPG11Q96JI7 2443 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 ANKHD1Q8IWZ3 2542 aaKnown RBP0.38□□□□□ -2.35
VPS13C-207ENST00000558919 ZNF292O60281 2723 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 FRAS1Q86XX4 4008 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 NRKQ7Z2Y5 1582 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 TRAV22A0A0B4J277 110 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 MGPP08493 103 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 SSBP3-AS1Q7Z2R9 100 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 NXT2Q9NPJ8 142 aaKnown RBP0.38□□□□□ -2.35
VPS13C-207ENST00000558919 CDC42SE2Q9NRR3 84 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 PRO1854Q9UHT4 67 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 AP4S1Q9Y587 144 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 ARL2-SNX15V9GYD0 113 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 KNTC1P50748 2209 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 SPAG17Q6Q759 2223 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 ARAP2Q8WZ64 1704 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 KIAA0556O60303 1618 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 BIVM-ERCC5R4GMW8 1640 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 SPTBN4Q9H254 2564 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 ARHGAP5Q13017 1502 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 CNTLNQ9NXG0 1405 aa0.38□□□□□ -2.35
VPS13C-207ENST00000558919 PLXNA2O75051 1894 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 KMT2DO14686 5537 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 RYR1P21817 5038 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 RB1CC1Q8TDY2 1594 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 LAMC3Q9Y6N6 1575 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 AFDNP55196 1824 aaKnown RBP0.37□□□□□ -2.35
VPS13C-207ENST00000558919 A0A0D9SFI3 127 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 hADV29S1A0JD25 119 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 M0R143 59 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 GNGT2O14610 69 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 S100A8P05109 93 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 IGLC1P0CG04 106 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 UBE2D3P61077 147 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 UBE2D2P62837 147 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 SEC11AP67812 179 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 SFTA2Q6UW10 78 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 SPINK6Q6UWN8 80 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 FAM223AQ8IWN6 122 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 LINC00472Q9H8W2 130 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 MYO9AB2RTY4 2548 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 LRRC7Q96NW7 1537 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 TENM4Q6N022 2769 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 LOC285556D6RIA3 1793 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 TTC28Q96AY4 2481 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 PREX1Q8TCU6 1659 aa0.37□□□□□ -2.35
VPS13C-207ENST00000558919 CFAP46Q8IYW2 2715 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 NWD1Q149M9 1564 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 IGSF10Q6WRI0 2623 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 AKAP11Q9UKA4 1901 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 KIF21BO75037 1637 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 ACACBO00763 2458 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 MAP1BP46821 2468 aaKnown RBP0.36□□□□□ -2.35
VPS13C-207ENST00000558919 PHGR1C9JFL3 82 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 M0R3E3 92 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 LINC00032P0C843 101 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 UBA52P62987 128 aaKnown RBP0.36□□□□□ -2.35
VPS13C-207ENST00000558919 KRTAP21-1Q3LI58 79 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 NCMAPQ5T1S8 102 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 Q6JHZ5 121 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 PMCHL2Q9BQD1 86 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 LRRK2Q5S007 2527 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 WIZO95785 1651 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 RIMS1Q86UR5 1692 aaKnown RBP0.36□□□□□ -2.35
VPS13C-207ENST00000558919 POLQO75417 2590 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 VIRMAQ69YN4 1812 aaKnown RBP0.36□□□□□ -2.35
VPS13C-207ENST00000558919 RYR3Q15413 4870 aa0.36□□□□□ -2.35
VPS13C-207ENST00000558919 ATRQ13535 2644 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 SHANK2Q9UPX8 1470 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 UBR5O95071 2799 aaPredicted RBP0.35□□□□□ -2.35
VPS13C-207ENST00000558919 MADDQ8WXG6 1647 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 BIRC6Q9NR09 4857 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms