RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 ATP5EP56381 51 aaPredicted RBP1.63□□□□□ -2.15
TDP1-217ENST00000557782 FXYD4P59646 89 aa1.63□□□□□ -2.15
TDP1-217ENST00000557782 UBE2L3P68036 154 aaKnown RBP1.63□□□□□ -2.15
TDP1-217ENST00000557782 CCL8P80075 99 aa1.63□□□□□ -2.15
TDP1-217ENST00000557782 DCDP81605 110 aaKnown RBP1.63□□□□□ -2.15
TDP1-217ENST00000557782 NCMAPQ5T1S8 102 aa1.63□□□□□ -2.15
TDP1-217ENST00000557782 NHSQ6T4R5 1651 aa1.63□□□□□ -2.15
TDP1-217ENST00000557782 SDK1Q7Z5N4 2213 aa1.63□□□□□ -2.15
TDP1-217ENST00000557782 DDX60LQ5H9U9 1706 aaKnown RBP1.63□□□□□ -2.15
TDP1-217ENST00000557782 COL4A1P02462 1669 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 TNRC6CQ9HCJ0 1690 aaKnown RBP1.62□□□□□ -2.15
TDP1-217ENST00000557782 TRAV13-2A0A0B4J235 113 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 LOC101927531A0A1B0GV80 90 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 SPTBP11277 2137 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 DEFB132Q7Z7B7 95 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 SBSPONQ8IVN8 264 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 DEFB119Q8N690 84 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 C10orf82Q8WW14 230 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 AMELYQ99218 206 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 DUOX1Q9NRD9 1551 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 UNC79Q9P2D8 2635 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 RGPD3A6NKT7 1758 aaPredicted RBP1.62□□□□□ -2.15
TDP1-217ENST00000557782 RGPD4Q7Z3J3 1758 aa1.62□□□□□ -2.15
TDP1-217ENST00000557782 PRRC2BQ5JSZ5 2229 aaKnown RBP1.61□□□□□ -2.15
TDP1-217ENST00000557782 HCG22E2RYF7 251 aa1.61□□□□□ -2.15
TDP1-217ENST00000557782 KRTAP6-3Q3LI67 103 aa1.61□□□□□ -2.15
TDP1-217ENST00000557782 XAF1Q6GPH4 301 aa1.61□□□□□ -2.15
TDP1-217ENST00000557782 ZNF818PQ6ZRF7 136 aa1.61□□□□□ -2.15
TDP1-217ENST00000557782 COMMD6Q7Z4G1 85 aa1.61□□□□□ -2.15
TDP1-217ENST00000557782 PPP1R1CQ8WVI7 109 aa1.61□□□□□ -2.15
TDP1-217ENST00000557782 DPH3P1Q9H4G8 78 aa1.61□□□□□ -2.15
TDP1-217ENST00000557782 PLXNA1Q9UIW2 1896 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 H3BQ15 152 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 H3BQF6 201 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 SIX6O95475 246 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 COL5A1-AS1Q5SY13 56 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 MYOZ3Q8TDC0 251 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 NRAPQ86VF7 1730 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 TNS1Q9HBL0 1735 aaKnown RBP1.6□□□□□ -2.15
TDP1-217ENST00000557782 NRXN2Q9P2S2 1712 aa1.6□□□□□ -2.15
TDP1-217ENST00000557782 COL14A1Q05707 1796 aaKnown RBP1.59□□□□□ -2.15
TDP1-217ENST00000557782 ZNF831Q5JPB2 1677 aa1.59□□□□□ -2.15
TDP1-217ENST00000557782 IGKV2-29A2NJV5 120 aaPredicted RBP1.59□□□□□ -2.15
TDP1-217ENST00000557782 FXYD3Q14802 87 aa1.59□□□□□ -2.15
TDP1-217ENST00000557782 CYP4F30PQ9H0H9 118 aa1.59□□□□□ -2.15
TDP1-217ENST00000557782 AP4S1Q9Y587 144 aa1.59□□□□□ -2.15
TDP1-217ENST00000557782 MED12Q93074 2177 aa1.59□□□□□ -2.16
TDP1-217ENST00000557782 PHIPQ8WWQ0 1821 aa1.59□□□□□ -2.16
TDP1-217ENST00000557782 C1orf167Q5SNV9 1468 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 LRRC37AA6NMS7 1700 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 QSER1Q2KHR3 1735 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 J3QKU1 62 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 UBE2D1P51668 147 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 GNG2P59768 71 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 GNG11P61952 73 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 SSBP1Q04837 148 aaKnown RBP1.58□□□□□ -2.16
TDP1-217ENST00000557782 FAM74A4Q5TZK3 123 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 Q6ZQY7 126 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 BET1LQ9NYM9 111 aa1.58□□□□□ -2.16
TDP1-217ENST00000557782 C10orf71Q711Q0 1435 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 NBDYA0A0U1RRE5 68 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 NCR3O14931 201 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 MPC2O95563 127 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 LINC00032P0C843 101 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 SNCAP37840 140 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 ZNF56Q15929 161 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 C20orf197Q8N268 126 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 C5orf56Q8N8D9 126 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 LINC00312Q9Y6C7 94 aa1.57□□□□□ -2.16
TDP1-217ENST00000557782 BTAF1O14981 1849 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 PSME4Q14997 1843 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 ABCA4P78363 2273 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 CEP350Q5VT06 3117 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 TRBV7-1A0A0A6YYK4 115 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 RBAKDNA6NC62 111 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 FXYD1O00168 92 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 CCL3L1P16619 93 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 CAV3P56539 151 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 LINC00208Q96KT6 92 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 SNHG12Q9BXW3 62 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 DPY30Q9C005 99 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 LY75O60449 1722 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 TANC1Q9C0D5 1861 aa1.56□□□□□ -2.16
TDP1-217ENST00000557782 NCOA6Q14686 2063 aaPredicted RBP1.55□□□□□ -2.16
TDP1-217ENST00000557782 MED13Q9UHV7 2174 aa1.55□□□□□ -2.16
TDP1-217ENST00000557782 LOC285556D6RIA3 1793 aa1.55□□□□□ -2.16
TDP1-217ENST00000557782 UBR3Q6ZT12 1888 aa1.55□□□□□ -2.16
TDP1-217ENST00000557782 C10orf128Q5T292 105 aa1.55□□□□□ -2.16
TDP1-217ENST00000557782 COX7B2Q8TF08 81 aa1.55□□□□□ -2.16
TDP1-217ENST00000557782 Q9H521 79 aa1.55□□□□□ -2.16
TDP1-217ENST00000557782 ASCC3Q8N3C0 2202 aaKnown RBP1.54□□□□□ -2.16
TDP1-217ENST00000557782 KRTDAPP60985 99 aa1.54□□□□□ -2.16
TDP1-217ENST00000557782 UBA52P62987 128 aaKnown RBP1.54□□□□□ -2.16
TDP1-217ENST00000557782 GNGT1P63211 74 aa1.54□□□□□ -2.16
TDP1-217ENST00000557782 KRTAP5-11Q6L8G4 156 aa1.54□□□□□ -2.16
TDP1-217ENST00000557782 Q86TA4 180 aa1.54□□□□□ -2.16
TDP1-217ENST00000557782 KRTAP13-1Q8IUC0 172 aa1.54□□□□□ -2.16
TDP1-217ENST00000557782 CCL19Q99731 98 aa1.54□□□□□ -2.16
TDP1-217ENST00000557782 A0A0G2JMZ2 1700 aa1.53□□□□□ -2.16
TDP1-217ENST00000557782 PVALEFA0A1B0GWK0 134 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms