RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 FOXI1Q12951 378 aa6.31□□□□□ -1.4
TDP1-210ENST00000554976 ZFAND6Q6FIF0 208 aa6.31□□□□□ -1.4
TDP1-210ENST00000554976 TMEM141Q96I45 108 aa6.31□□□□□ -1.4
TDP1-210ENST00000554976 SCGB3A1Q96QR1 104 aa6.31□□□□□ -1.4
TDP1-210ENST00000554976 MRPL35Q9NZE8 188 aaKnown RBP6.31□□□□□ -1.4
TDP1-210ENST00000554976 RRN3P1Q2M238 152 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 SBSPONQ8IVN8 264 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 VCX2Q9H322 139 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 M0QXV9 152 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 IGKCP01834 107 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 FHL2Q14192 279 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 DEFB104AQ8WTQ1 72 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 PYGO1Q9Y3Y4 419 aa6.3□□□□□ -1.4
TDP1-210ENST00000554976 TRBV10-1A0A0K0K1A3 114 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 F8VRH5 84 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 APOMO95445 188 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 UBE2D3P61077 147 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 UBE2D2P62837 147 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 GAGE13Q4V321 117 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 SLC25A29Q8N8R3 303 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 Q8NAQ8 132 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 IGKV2D-26A0A0A0MRZ7 120 aa6.29□□□□□ -1.4
TDP1-210ENST00000554976 TRBV6-4A0A1B0GX49 114 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 PRSS29PA6NIE9 313 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 DPM2O94777 84 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 IGHV4-30-4P0DP06 118 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 AMELXQ99217 191 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 HIGD1BQ9P298 99 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 IGLV4-3A0A075B6K6 122 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 A4D1N5 150 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 PRSS1P07477 247 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 NTM-AS1Q6ZSK4 140 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 UBE2D4Q9Y2X8 147 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 NOTCH2Q04721 2471 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 TRBV7-3A0A075B6L6 115 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 PLNP26678 52 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 APOC4P55056 127 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 OXLD1Q5BKU9 147 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 ZC2HC1BQ5TFG8 222 aa6.28□□□□□ -1.4
TDP1-210ENST00000554976 PPDPFQ9H3Y8 114 aa6.27□□□□□ -1.41
TDP1-210ENST00000554976 CSDC2Q9Y534 153 aaKnown RBP6.27□□□□□ -1.41
TDP1-210ENST00000554976 SETD2Q9BYW2 2564 aaPredicted RBP6.27□□□□□ -1.41
TDP1-210ENST00000554976 H3BMG7 143 aa6.27□□□□□ -1.41
TDP1-210ENST00000554976 PMVKQ15126 192 aa6.27□□□□□ -1.41
TDP1-210ENST00000554976 OPRPNQ99935 248 aaPredicted RBP6.27□□□□□ -1.41
TDP1-210ENST00000554976 IGLL5B9A064 214 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 CCDC179H3BU77 68 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 FXYD2P54710 66 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 NFE4Q86UQ8 179 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 ZNRF2Q8NHG8 242 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 LOC100131303A0A0U1RQF7 123 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 A0A1B0GWB2 263 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 NDUFV3P56181 108 aaKnown RBP6.26□□□□□ -1.41
TDP1-210ENST00000554976 DEFB135Q30KP9 77 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 TMEM126AQ9H061 195 aa6.26□□□□□ -1.41
TDP1-210ENST00000554976 IGHV4-28A0A0C4DH34 117 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 LYRM9A8MSI8 78 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 FAM19A3Q7Z5A8 133 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 TIMM21Q9BVV7 248 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 IGHV3-38A0A0C4DH36 116 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 C11orf86A6NJI1 115 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 DAZ4Q86SG3 579 aaKnown RBP6.25□□□□□ -1.41
TDP1-210ENST00000554976 PCP2Q8IVA1 136 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 C3orf56Q8N813 242 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 DAZ3Q9NR90 486 aaKnown RBP6.25□□□□□ -1.41
TDP1-210ENST00000554976 MRPS36P82909 103 aaKnown RBP6.25□□□□□ -1.41
TDP1-210ENST00000554976 ATRQ13535 2644 aa6.25□□□□□ -1.41
TDP1-210ENST00000554976 MIFP14174 115 aa6.24□□□□□ -1.41
TDP1-210ENST00000554976 GCSHP23434 173 aa6.24□□□□□ -1.41
TDP1-210ENST00000554976 Q6Q795 121 aa6.24□□□□□ -1.41
TDP1-210ENST00000554976 CELA1Q9UNI1 258 aa6.24□□□□□ -1.41
TDP1-210ENST00000554976 JMJD1CQ15652 2540 aa6.24□□□□□ -1.41
TDP1-210ENST00000554976 TRGV2A0A075B6R0 118 aa6.23□□□□□ -1.41
TDP1-210ENST00000554976 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.23□□□□□ -1.41
TDP1-210ENST00000554976 IGKV2-29A2NJV5 120 aaPredicted RBP6.23□□□□□ -1.41
TDP1-210ENST00000554976 TMEM262E9PQX1 116 aa6.23□□□□□ -1.41
TDP1-210ENST00000554976 K7ERJ3 54 aa6.23□□□□□ -1.41
TDP1-210ENST00000554976 RPL36AP83881 106 aaKnown RBP6.23□□□□□ -1.41
TDP1-210ENST00000554976 FAM222AQ5U5X8 452 aa6.23□□□□□ -1.41
TDP1-210ENST00000554976 CEMP1Q6PRD7 247 aaPredicted RBP6.23□□□□□ -1.41
TDP1-210ENST00000554976 HUWE1Q7Z6Z7 4374 aaKnown RBP6.23□□□□□ -1.41
TDP1-210ENST00000554976 MAPKAPK5-AS1Q8N8E1 139 aa6.23□□□□□ -1.41
TDP1-210ENST00000554976 PPDPFLQ8WWR9 84 aa6.23□□□□□ -1.41
TDP1-210ENST00000554976 RPL36ALQ969Q0 106 aaKnown RBP6.23□□□□□ -1.41
TDP1-210ENST00000554976 NHP2Q9NX24 153 aaKnown RBP6.23□□□□□ -1.41
TDP1-210ENST00000554976 IFITM1P13164 125 aa6.22□□□□□ -1.41
TDP1-210ENST00000554976 KPRPQ5T749 579 aaPredicted RBP6.22□□□□□ -1.41
TDP1-210ENST00000554976 CEND1Q8N111 149 aa6.22□□□□□ -1.41
TDP1-210ENST00000554976 CHAC1Q9BUX1 264 aa6.22□□□□□ -1.41
TDP1-210ENST00000554976 TTTY13Q9BZ97 58 aa6.22□□□□□ -1.41
TDP1-210ENST00000554976 MAST4O15021 2626 aa6.22□□□□□ -1.41
TDP1-210ENST00000554976 PKD1L1Q8TDX9 2849 aa6.21□□□□□ -1.41
TDP1-210ENST00000554976 TMEM223A0PJW6 202 aa6.21□□□□□ -1.41
TDP1-210ENST00000554976 ZNF22P17026 224 aaPredicted RBP6.21□□□□□ -1.41
TDP1-210ENST00000554976 SMCPP49901 116 aaPredicted RBP6.21□□□□□ -1.41
TDP1-210ENST00000554976 EMP1P54849 157 aa6.21□□□□□ -1.41
TDP1-210ENST00000554976 TCTAP57738 103 aa6.21□□□□□ -1.41
TDP1-210ENST00000554976 GAGE2BQ13066 116 aa6.21□□□□□ -1.41
TDP1-210ENST00000554976 TAL2Q16559 108 aa6.21□□□□□ -1.41
TDP1-210ENST00000554976 GAGE2EQ4V326 116 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms