RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 TINCRA0A1B0GVN0 87 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 TMEM223A0PJW6 202 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 C9orf118A6NHY6 69 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 H7C423 109 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 K7EQD1 137 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 LEPROTO15243 131 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 RPL35AP18077 110 aaKnown RBP4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 TIRAPP58753 221 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 UBE2D3P61077 147 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 UBE2D2P62837 147 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 SMAGPQ0VAQ4 97 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 SBSPONQ8IVN8 264 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 SLC25A29Q8N8R3 303 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 OPRPNQ99935 248 aaPredicted RBP4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 TTTY13Q9BZ97 58 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 WFDC10AQ9H1F0 79 aa4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 NOP10Q9NPE3 64 aaKnown RBP4.27□□□□□ -1.73
VIPAS39-204ENST00000553576 A0A1B0GWB2 263 aa4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 SMIM13P0DJ93 91 aa4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 ZNF22P17026 224 aaPredicted RBP4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 TCTAP57738 103 aa4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 OR5A1Q8NGJ0 315 aa4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 DEFB104AQ8WTQ1 72 aa4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 PHLDA1Q8WV24 401 aaPredicted RBP4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 PLEKHB2Q96CS7 222 aa4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 SPANXB1Q9NS25 103 aaPredicted RBP4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 NOTCH3Q9UM47 2321 aa4.26□□□□□ -1.73
VIPAS39-204ENST00000553576 NSD1Q96L73 2696 aaPredicted RBP4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 IGLV5-45A0A087WSX0 123 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 A0A0J9YXV3 536 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 A0A0J9YY99 117 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 ZNF815PA8K554 130 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 J3QQQ9 107 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 CCL25O15444 150 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 LINC00694P0DN24 101 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 PTTG1IPP53801 180 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 FXYD2P54710 66 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 TMEM170BQ5T4T1 132 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 NTM-AS1Q6ZSK4 140 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 Q6ZVH6 145 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 HIVEP1P15822 2718 aa4.25□□□□□ -1.73
VIPAS39-204ENST00000553576 SETD2Q9BYW2 2564 aaPredicted RBP4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 TRGV2A0A075B6R0 118 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 IGHV1-58A0A0C4DH39 117 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE12BA1L429 117 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 LYRM9A8MSI8 78 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE7O76087 117 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE12FP0CL80 117 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE12GP0CL81 117 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE12IP0CL82 117 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 GCSHP23434 173 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 UBE2D1P51668 147 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 APOC4P55056 127 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 C12orf74Q32Q52 190 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 HIST1H4GQ99525 98 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 CDC42SE2Q9NRR3 84 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 NOTCH2Q04721 2471 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 HECTD1Q9ULT8 2610 aa4.24□□□□□ -1.73
VIPAS39-204ENST00000553576 CMYA5Q8N3K9 4069 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 TRGV4A0A0C4DH28 118 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 IGHV3-38A0A0C4DH36 116 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 IGKV2-29A2NJV5 120 aaPredicted RBP4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 A8MZ25 164 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 ZNF561-AS1K7EIQ3 104 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 IGHV3-30-3P0DP02 117 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 LGALS3P17931 250 aaKnown RBP4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 EMP1P54849 157 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 TSPEAR-AS2P59090 65 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 VAMP3Q15836 100 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 AMMECR1LQ6DCA0 310 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 CEMP1Q6PRD7 247 aaPredicted RBP4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 SPATA3Q8NHX4 192 aa4.23□□□□□ -1.73
VIPAS39-204ENST00000553576 A0A1W2PPM0 123 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE12JA6NER3 117 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 IGLL5B9A064 214 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 H3BUT2 72 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 K7EP13 123 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 IGHV3-30P01768 117 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 IGHV3-30-5P0DP03 117 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 MIFP14174 115 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 HERVK_113P63121 156 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE4Q13068 117 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE5Q13069 117 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 SRSF9Q13242 221 aaKnown RBP eCLIP4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 GAGE13Q4V321 117 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 DGAT2L7PQ6IED9 249 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 SCGB1D4Q6XE38 83 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 Q6ZUT4 128 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 GTF2H5Q6ZYL4 71 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 RNF183Q96D59 192 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 VSIG2Q96IQ7 327 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 TMEM243Q9BU79 118 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 JMJD1CQ15652 2540 aa4.22□□□□□ -1.73
VIPAS39-204ENST00000553576 TRBV6-8A0A0A6YYG3 113 aa4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 IGLV5-39A0A0G2JS06 123 aa4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 A0A1B0GUV1 79 aa4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 GAGE10A6NGK3 116 aa4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 TIMM17BO60830 172 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms