RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PSMG3-AS1Q96PY0 264 aa11.56□□□□□ -0.56
CUX1-211ENST00000546411 DAZ3Q9NR90 486 aaKnown RBP11.56□□□□□ -0.56
CUX1-211ENST00000546411 TNRC18O15417 2968 aaPredicted RBP11.56□□□□□ -0.56
CUX1-211ENST00000546411 TMEM263Q8WUH6 116 aaKnown RBP11.56□□□□□ -0.56
CUX1-211ENST00000546411 LAMTOR3Q9UHA4 124 aa11.56□□□□□ -0.56
CUX1-211ENST00000546411 COL12A1Q99715 3063 aa11.55□□□□□ -0.56
CUX1-211ENST00000546411 A0A0J9YXY3 114 aa11.55□□□□□ -0.56
CUX1-211ENST00000546411 TCL1BO95988 128 aa11.55□□□□□ -0.56
CUX1-211ENST00000546411 ANKRD29Q8N6D5 301 aa11.55□□□□□ -0.56
CUX1-211ENST00000546411 ITPR3Q14573 2671 aa11.54□□□□□ -0.56
CUX1-211ENST00000546411 MUC3AQ02505 3323 aa11.54□□□□□ -0.56
CUX1-211ENST00000546411 BBC3Q96PG8 261 aaPredicted RBP11.54□□□□□ -0.56
CUX1-211ENST00000546411 TSHBP01222 138 aa11.54□□□□□ -0.56
CUX1-211ENST00000546411 NFE4Q86UQ8 179 aa11.54□□□□□ -0.56
CUX1-211ENST00000546411 LINC01620Q4KN68 170 aa11.54□□□□□ -0.56
CUX1-211ENST00000546411 ICOSQ9Y6W8 199 aa11.54□□□□□ -0.56
CUX1-211ENST00000546411 COX8CQ7Z4L0 72 aa11.53□□□□□ -0.56
CUX1-211ENST00000546411 TRAV25A0A0B4J276 109 aa11.53□□□□□ -0.56
CUX1-211ENST00000546411 HIST1H4AP62805 103 aaKnown RBP11.53□□□□□ -0.56
CUX1-211ENST00000546411 APOC4P55056 127 aa11.53□□□□□ -0.56
CUX1-211ENST00000546411 TEN1Q86WV5 123 aa11.53□□□□□ -0.56
CUX1-211ENST00000546411 G3V4G9 280 aa11.52□□□□□ -0.56
CUX1-211ENST00000546411 SND1-IT1Q9HBX3 110 aa11.52□□□□□ -0.56
CUX1-211ENST00000546411 SOCS3O14543 225 aa11.52□□□□□ -0.57
CUX1-211ENST00000546411 LINC00482Q8N8I6 264 aa11.52□□□□□ -0.57
CUX1-211ENST00000546411 C9orf85Q96MD7 179 aa11.52□□□□□ -0.57
CUX1-211ENST00000546411 TRAV4A0A0B4J268 109 aa11.51□□□□□ -0.57
CUX1-211ENST00000546411 TINCRA0A1B0GVN0 87 aa11.51□□□□□ -0.57
CUX1-211ENST00000546411 LINC01006Q8NI28 216 aa11.51□□□□□ -0.57
CUX1-211ENST00000546411 SMR3AQ99954 134 aa11.51□□□□□ -0.57
CUX1-211ENST00000546411 LRBAP50851 2863 aa11.51□□□□□ -0.57
CUX1-211ENST00000546411 FOXI1Q12951 378 aa11.51□□□□□ -0.57
CUX1-211ENST00000546411 COL27A1Q8IZC6 1860 aaPredicted RBP11.5□□□□□ -0.57
CUX1-211ENST00000546411 MIR7-3HGQ8N6C7 128 aa11.5□□□□□ -0.57
CUX1-211ENST00000546411 IGLV2-18A0A075B6J9 118 aa11.5□□□□□ -0.57
CUX1-211ENST00000546411 TMEM223A0PJW6 202 aa11.5□□□□□ -0.57
CUX1-211ENST00000546411 ZNF561-AS1K7EIQ3 104 aa11.5□□□□□ -0.57
CUX1-211ENST00000546411 LOC100131303A0A0U1RQF7 123 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 ATRQ13535 2644 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 TRBV6-5A0A0K0K1A5 114 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 CRIP2P52943 208 aaPredicted RBP11.49□□□□□ -0.57
CUX1-211ENST00000546411 ZMAT4Q9H898 229 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 IGIPA6NJ69 53 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 BAALC-AS2P0C853 105 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 C15orf53Q8NAA6 179 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 F8P00451 2351 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 ZNF580Q9UK33 172 aa11.49□□□□□ -0.57
CUX1-211ENST00000546411 TRAV13-2A0A0B4J235 113 aa11.48□□□□□ -0.57
CUX1-211ENST00000546411 NDUFA7O95182 113 aa11.48□□□□□ -0.57
CUX1-211ENST00000546411 IFITM1P13164 125 aa11.48□□□□□ -0.57
CUX1-211ENST00000546411 COX7B2Q8TF08 81 aa11.48□□□□□ -0.57
CUX1-211ENST00000546411 LRRC75A-AS1Q8N1F1 130 aa11.48□□□□□ -0.57
CUX1-211ENST00000546411 MRAPQ8TCY5 172 aa11.48□□□□□ -0.57
CUX1-211ENST00000546411 FLNCQ14315 2725 aa11.48□□□□□ -0.57
CUX1-211ENST00000546411 ODF3L2Q3SX64 289 aa11.47□□□□□ -0.57
CUX1-211ENST00000546411 TRBV10-1A0A0K0K1A3 114 aa11.47□□□□□ -0.57
CUX1-211ENST00000546411 INAFM1C9JVW0 142 aa11.47□□□□□ -0.57
CUX1-211ENST00000546411 EDA2RQ9HAV5 297 aa11.47□□□□□ -0.57
CUX1-211ENST00000546411 IGHV3-30P01768 117 aa11.47□□□□□ -0.57
CUX1-211ENST00000546411 IGHV3-33P01772 117 aa11.47□□□□□ -0.57
CUX1-211ENST00000546411 IGHV3-30-5P0DP03 117 aa11.47□□□□□ -0.57
CUX1-211ENST00000546411 C9orf66Q5T8R8 295 aa11.46□□□□□ -0.57
CUX1-211ENST00000546411 Q9HAA7 133 aa11.46□□□□□ -0.57
CUX1-211ENST00000546411 PIK3CD-AS1Q5SR53 167 aa11.46□□□□□ -0.58
CUX1-211ENST00000546411 CHD6Q8TD26 2715 aa11.45□□□□□ -0.58
CUX1-211ENST00000546411 INSL3P51460 131 aa11.45□□□□□ -0.58
CUX1-211ENST00000546411 HERV-K104P63124 156 aa11.45□□□□□ -0.58
CUX1-211ENST00000546411 MIAQ16674 131 aa11.45□□□□□ -0.58
CUX1-211ENST00000546411 FAM222AQ5U5X8 452 aa11.45□□□□□ -0.58
CUX1-211ENST00000546411 SPANXB1Q9NS25 103 aaPredicted RBP11.45□□□□□ -0.58
CUX1-211ENST00000546411 ATP5G1P05496 136 aa11.44□□□□□ -0.58
CUX1-211ENST00000546411 TSPEAR-AS2P59090 65 aa11.44□□□□□ -0.58
CUX1-211ENST00000546411 KLK12Q9UKR0 248 aa11.44□□□□□ -0.58
CUX1-211ENST00000546411 TRAV26-1A0A087WT03 109 aa11.43□□□□□ -0.58
CUX1-211ENST00000546411 MGAM2Q2M2H8 2515 aa11.43□□□□□ -0.58
CUX1-211ENST00000546411 SPART-AS1P0CW21 52 aa11.42□□□□□ -0.58
CUX1-211ENST00000546411 INAFM2P0DMQ5 153 aa11.42□□□□□ -0.58
CUX1-211ENST00000546411 PRO0255Q9UI72 69 aa11.42□□□□□ -0.58
CUX1-211ENST00000546411 TEX49A0A1B0GTD5 131 aa11.42□□□□□ -0.58
CUX1-211ENST00000546411 IGLV4-69A0A075B6H9 119 aa11.42□□□□□ -0.58
CUX1-211ENST00000546411 COX7A2LO14548 114 aa11.42□□□□□ -0.58
CUX1-211ENST00000546411 Q6ZSN1 163 aa11.41□□□□□ -0.58
CUX1-211ENST00000546411 TRIAP1O43715 76 aa11.41□□□□□ -0.58
CUX1-211ENST00000546411 UBE2D4Q9Y2X8 147 aa11.4□□□□□ -0.58
CUX1-211ENST00000546411 IGKV2D-24A0A075B6R9 120 aa11.4□□□□□ -0.58
CUX1-211ENST00000546411 RPL32P62910 135 aaKnown RBP11.4□□□□□ -0.58
CUX1-211ENST00000546411 MRPL23Q16540 153 aaKnown RBP11.4□□□□□ -0.58
CUX1-211ENST00000546411 OVOL2Q9BRP0 275 aa11.4□□□□□ -0.58
CUX1-211ENST00000546411 HELZ2Q9BYK8 2649 aaKnown RBP11.4□□□□□ -0.58
CUX1-211ENST00000546411 PLA2G2AP14555 144 aa11.4□□□□□ -0.58
CUX1-211ENST00000546411 CRYBA4P53673 196 aa11.4□□□□□ -0.58
CUX1-211ENST00000546411 LINC00269Q8N2A0 174 aa11.4□□□□□ -0.58
CUX1-211ENST00000546411 LECT2O14960 151 aa11.4□□□□□ -0.59
CUX1-211ENST00000546411 POM121L12Q8N7R1 296 aa11.39□□□□□ -0.59
CUX1-211ENST00000546411 Q9UF83 564 aa11.39□□□□□ -0.59
CUX1-211ENST00000546411 ASPMQ8IZT6 3477 aa11.39□□□□□ -0.59
CUX1-211ENST00000546411 TRBV10-2A0A0K0K1G8 114 aa11.39□□□□□ -0.59
CUX1-211ENST00000546411 PYGO1Q9Y3Y4 419 aa11.38□□□□□ -0.59
CUX1-211ENST00000546411 KIF25-AS1Q9Y6Z4 181 aa11.37□□□□□ -0.59
CUX1-211ENST00000546411 A0A0B4J2C4 111 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 261.7 ms