RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 SHISA2Q6UWI4 295 aa6.31□□□□□ -1.4
TDP1-204ENST00000545686 Q6YL49 198 aa6.31□□□□□ -1.4
TDP1-204ENST00000545686 IMUPQ9GZP8 106 aa6.31□□□□□ -1.4
TDP1-204ENST00000545686 Q9H8V8 135 aa6.31□□□□□ -1.4
TDP1-204ENST00000545686 SS18L2Q9UHA2 77 aa6.31□□□□□ -1.4
TDP1-204ENST00000545686 ITPR1Q14643 2758 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 IGHV3-38A0A0C4DH36 116 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 HERV-K104P63124 156 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.3□□□□□ -1.4
TDP1-204ENST00000545686 DAND5Q8N907 189 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 A0A096LNT2 108 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 TRBV10-1A0A0K0K1A3 114 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 SMIM1B2RUZ4 78 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 TRACP01848 142 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 IL17DQ8TAD2 202 aa6.3□□□□□ -1.4
TDP1-204ENST00000545686 COL12A1Q99715 3063 aa6.29□□□□□ -1.4
TDP1-204ENST00000545686 CELSR2Q9HCU4 2923 aa6.29□□□□□ -1.4
TDP1-204ENST00000545686 CCDC179H3BU77 68 aa6.29□□□□□ -1.4
TDP1-204ENST00000545686 COX6A2Q02221 97 aa6.29□□□□□ -1.4
TDP1-204ENST00000545686 Q8N2B8 174 aa6.29□□□□□ -1.4
TDP1-204ENST00000545686 ZNF625Q96I27 306 aaPredicted RBP6.29□□□□□ -1.4
TDP1-204ENST00000545686 PRM2P04554 102 aa6.28□□□□□ -1.4
TDP1-204ENST00000545686 DAZ2Q13117 558 aaKnown RBP6.28□□□□□ -1.4
TDP1-204ENST00000545686 DAZ4Q86SG3 579 aaKnown RBP6.28□□□□□ -1.4
TDP1-204ENST00000545686 C4orf3Q8WVX3 66 aa6.28□□□□□ -1.4
TDP1-204ENST00000545686 DAZ3Q9NR90 486 aaKnown RBP6.28□□□□□ -1.4
TDP1-204ENST00000545686 CR1P17927 2039 aa6.28□□□□□ -1.4
TDP1-204ENST00000545686 DYNLRB2Q8TF09 96 aa6.28□□□□□ -1.4
TDP1-204ENST00000545686 PF4P02776 101 aa6.27□□□□□ -1.4
TDP1-204ENST00000545686 RPL36AP83881 106 aaKnown RBP6.27□□□□□ -1.4
TDP1-204ENST00000545686 DEFB136Q30KP8 78 aa6.27□□□□□ -1.4
TDP1-204ENST00000545686 FAM222AQ5U5X8 452 aa6.27□□□□□ -1.4
TDP1-204ENST00000545686 PRIMA1Q86XR5 153 aa6.27□□□□□ -1.4
TDP1-204ENST00000545686 RPL36ALQ969Q0 106 aaKnown RBP6.27□□□□□ -1.4
TDP1-204ENST00000545686 NCOR2Q9Y618 2525 aa6.27□□□□□ -1.41
TDP1-204ENST00000545686 F5H768 121 aa6.27□□□□□ -1.41
TDP1-204ENST00000545686 K7EQD1 137 aa6.27□□□□□ -1.41
TDP1-204ENST00000545686 SOSTDC1Q6X4U4 206 aa6.27□□□□□ -1.41
TDP1-204ENST00000545686 SPTBN4Q9H254 2564 aa6.27□□□□□ -1.41
TDP1-204ENST00000545686 DOPEY1Q5JWR5 2465 aa6.27□□□□□ -1.41
TDP1-204ENST00000545686 SPG11Q96JI7 2443 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 DEFB114Q30KQ6 69 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 MEIG1Q5JSS6 88 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 SDIM1Q6ZPB5 146 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 TRAV25A0A0B4J276 109 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 C18orf65Q6ZTR6 163 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 LINC00643Q86TS7 51 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 CDC42SE2Q9NRR3 84 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 CREBBPQ92793 2442 aa6.26□□□□□ -1.41
TDP1-204ENST00000545686 ANKRD17O75179 2603 aaKnown RBP6.26□□□□□ -1.41
TDP1-204ENST00000545686 LINC00694P0DN24 101 aa6.25□□□□□ -1.41
TDP1-204ENST00000545686 OVOL2Q9BRP0 275 aa6.25□□□□□ -1.41
TDP1-204ENST00000545686 CHD8Q9HCK8 2581 aa6.25□□□□□ -1.41
TDP1-204ENST00000545686 TRAV13-2A0A0B4J235 113 aa6.25□□□□□ -1.41
TDP1-204ENST00000545686 INAFM2P0DMQ5 153 aa6.25□□□□□ -1.41
TDP1-204ENST00000545686 TRGV1A0A0A0MS02 117 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 ATP5G1P05496 136 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 RPL28P46779 137 aaKnown RBP6.24□□□□□ -1.41
TDP1-204ENST00000545686 NTM-AS1Q6ZSK4 140 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 TRAV13-1A0A0B4J241 112 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 ODF3L2Q3SX64 289 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 HIST2H2BCQ6DN03 193 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 HIST2H2BDQ6DRA6 164 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 C1orf158Q8N1D5 194 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 XCL2Q9UBD3 114 aa6.24□□□□□ -1.41
TDP1-204ENST00000545686 MAP1AP78559 2803 aaPredicted RBP6.24□□□□□ -1.41
TDP1-204ENST00000545686 BAALC-AS2P0C853 105 aa6.23□□□□□ -1.41
TDP1-204ENST00000545686 CXCL5P42830 114 aa6.23□□□□□ -1.41
TDP1-204ENST00000545686 STHQ8IWL8 128 aa6.23□□□□□ -1.41
TDP1-204ENST00000545686 CRPP02741 224 aa6.23□□□□□ -1.41
TDP1-204ENST00000545686 IGHV4-31P0DP07 118 aa6.23□□□□□ -1.41
TDP1-204ENST00000545686 TMEM243Q9BU79 118 aa6.23□□□□□ -1.41
TDP1-204ENST00000545686 TMEM126AQ9H061 195 aa6.23□□□□□ -1.41
TDP1-204ENST00000545686 A0A0U1RRA0 63 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 FAM236AA0A1B0GUQ0 79 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 FAM236BA0A1B0GV22 79 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 UBE2L6O14933 153 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 NDUFA7O95182 113 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 SMCR5Q8TEV8 140 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 NRGNQ92686 78 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 FAM110AQ9BQ89 295 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 CHCHD5Q9BSY4 110 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 C22orf24Q9Y442 160 aa6.22□□□□□ -1.41
TDP1-204ENST00000545686 MXRA5Q9NR99 2828 aa6.21□□□□□ -1.41
TDP1-204ENST00000545686 KHDC1LQ5JSQ8 128 aa6.21□□□□□ -1.41
TDP1-204ENST00000545686 Q6ZTI0 123 aa6.21□□□□□ -1.41
TDP1-204ENST00000545686 COX7B2Q8TF08 81 aa6.21□□□□□ -1.41
TDP1-204ENST00000545686 FAM218AQ96MZ4 157 aa6.21□□□□□ -1.41
TDP1-204ENST00000545686 Q96MF0 132 aa6.21□□□□□ -1.42
TDP1-204ENST00000545686 MALP21145 153 aa6.2□□□□□ -1.42
TDP1-204ENST00000545686 C5orf38Q86SI9 138 aa6.2□□□□□ -1.42
TDP1-204ENST00000545686 ZANQ9Y493 2812 aa6.2□□□□□ -1.42
TDP1-204ENST00000545686 TMEM86BQ8N661 226 aa6.2□□□□□ -1.42
TDP1-204ENST00000545686 MAPK1IP1LQ8NDC0 245 aa6.2□□□□□ -1.42
TDP1-204ENST00000545686 USP9XQ93008 2570 aaPredicted RBP6.2□□□□□ -1.42
TDP1-204ENST00000545686 TRBV6-4A0A1B0GX49 114 aa6.19□□□□□ -1.42
TDP1-204ENST00000545686 H0YGX0 51 aa6.19□□□□□ -1.42
TDP1-204ENST00000545686 CMC4P56277 68 aaPredicted RBP6.19□□□□□ -1.42
TDP1-204ENST00000545686 MIR7-3HGQ8N6C7 128 aa6.19□□□□□ -1.42
TDP1-204ENST00000545686 C16orf74Q96GX8 76 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms