RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 OR5A1Q8NGJ0 315 aa11.53□□□□□ -0.56
LIG1-204ENST00000542460 TIMM21Q9BVV7 248 aa11.53□□□□□ -0.56
LIG1-204ENST00000542460 AP5S1Q9NUS5 200 aa11.53□□□□□ -0.56
LIG1-204ENST00000542460 UBE2D4Q9Y2X8 147 aa11.53□□□□□ -0.56
LIG1-204ENST00000542460 CSDC2Q9Y534 153 aaKnown RBP11.53□□□□□ -0.56
LIG1-204ENST00000542460 TRAV8-3A0A0A6YYJ7 113 aa11.52□□□□□ -0.57
LIG1-204ENST00000542460 LINC00269Q8N2A0 174 aa11.52□□□□□ -0.57
LIG1-204ENST00000542460 CYSLTR1Q9Y271 337 aa11.52□□□□□ -0.57
LIG1-204ENST00000542460 CRPP02741 224 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 Q0VG73 95 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 C2orf66Q6UXQ4 117 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 NFE4Q86UQ8 179 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 UBE2WQ96B02 151 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 URB1-AS1Q96HZ7 61 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 SPANXA1Q9NS26 97 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 PRR34Q9NV39 138 aa11.51□□□□□ -0.57
LIG1-204ENST00000542460 REG3AQ06141 175 aa11.5□□□□□ -0.57
LIG1-204ENST00000542460 ENHOQ6UWT2 76 aa11.5□□□□□ -0.57
LIG1-204ENST00000542460 BAGE3Q86Y29 109 aa11.5□□□□□ -0.57
LIG1-204ENST00000542460 Q9HAA7 133 aa11.5□□□□□ -0.57
LIG1-204ENST00000542460 CDC42SE2Q9NRR3 84 aa11.5□□□□□ -0.57
LIG1-204ENST00000542460 ZNF664Q8N3J9 261 aa11.5□□□□□ -0.57
LIG1-204ENST00000542460 PYGO1Q9Y3Y4 419 aa11.5□□□□□ -0.57
LIG1-204ENST00000542460 LINC01549A6NIU2 74 aa11.49□□□□□ -0.57
LIG1-204ENST00000542460 MIAQ16674 131 aa11.49□□□□□ -0.57
LIG1-204ENST00000542460 CHCHD1Q96BP2 118 aaKnown RBP11.49□□□□□ -0.57
LIG1-204ENST00000542460 CLPSL2Q6UWE3 100 aa11.48□□□□□ -0.57
LIG1-204ENST00000542460 TOMM6Q96B49 74 aa11.48□□□□□ -0.57
LIG1-204ENST00000542460 LINC00518Q8N0U6 118 aa11.47□□□□□ -0.57
LIG1-204ENST00000542460 RMI2Q96E14 147 aa11.47□□□□□ -0.57
LIG1-204ENST00000542460 S100A2P29034 98 aa11.46□□□□□ -0.57
LIG1-204ENST00000542460 MRPS36P82909 103 aaKnown RBP11.46□□□□□ -0.57
LIG1-204ENST00000542460 TM2D2Q9BX73 214 aa11.46□□□□□ -0.57
LIG1-204ENST00000542460 FRAS1Q86XX4 4008 aa11.46□□□□□ -0.57
LIG1-204ENST00000542460 IGIPA6NJ69 53 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 NPSP0C0P6 89 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 PDZD11Q5EBL8 140 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 HIST3H2BBQ8N257 126 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 COX11Q9Y6N1 276 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 IGKV2D-24A0A075B6R9 120 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 TRAV8-4A0A0B4J246 113 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 IGKV3OR2-268A0A0C4DH90 116 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 RTL8CO15255 209 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 Q6ZRN7 208 aaPredicted RBP11.45□□□□□ -0.58
LIG1-204ENST00000542460 Q6ZUT4 128 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 ERASQ7Z444 233 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 FAM104AQ969W3 186 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 OPRPNQ99935 248 aaPredicted RBP11.45□□□□□ -0.58
LIG1-204ENST00000542460 C1orf43Q9BWL3 253 aa11.45□□□□□ -0.58
LIG1-204ENST00000542460 A0A096LNJ9 63 aa11.44□□□□□ -0.58
LIG1-204ENST00000542460 HBDP02042 147 aa11.44□□□□□ -0.58
LIG1-204ENST00000542460 SCGB3A1Q96QR1 104 aa11.44□□□□□ -0.58
LIG1-204ENST00000542460 TIMM17AQ99595 171 aa11.44□□□□□ -0.58
LIG1-204ENST00000542460 IGLV4-3A0A075B6K6 122 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 PSCAO43653 123 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 HSBP1O75506 76 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 SERF1AO75920 110 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 SMIM6P0DI80 62 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 PMCHL1Q16048 86 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 RNASE13Q5GAN3 156 aaKnown RBP11.43□□□□□ -0.58
LIG1-204ENST00000542460 TMEM141Q96I45 108 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 C12orf57Q99622 126 aa11.43□□□□□ -0.58
LIG1-204ENST00000542460 PAPPA-AS1Q5QFB9 102 aa11.42□□□□□ -0.58
LIG1-204ENST00000542460 Q6ZN92 141 aa11.42□□□□□ -0.58
LIG1-204ENST00000542460 DNAH2Q9P225 4427 aa11.42□□□□□ -0.58
LIG1-204ENST00000542460 IGLV10-54A0A075B6I4 117 aa11.41□□□□□ -0.58
LIG1-204ENST00000542460 LINC00959A0A1B0GUT2 108 aa11.41□□□□□ -0.58
LIG1-204ENST00000542460 IFITM10A6NMD0 228 aa11.41□□□□□ -0.58
LIG1-204ENST00000542460 LINC00310P59036 64 aa11.41□□□□□ -0.58
LIG1-204ENST00000542460 LINC00336Q6ZUF6 198 aa11.41□□□□□ -0.58
LIG1-204ENST00000542460 CCL25O15444 150 aa11.4□□□□□ -0.58
LIG1-204ENST00000542460 FABP4P15090 132 aa11.4□□□□□ -0.58
LIG1-204ENST00000542460 SS18Q15532 418 aa11.4□□□□□ -0.58
LIG1-204ENST00000542460 COA6Q5JTJ3 125 aaKnown RBP11.4□□□□□ -0.58
LIG1-204ENST00000542460 TEX43Q6ZNM6 134 aa11.4□□□□□ -0.58
LIG1-204ENST00000542460 VCX2Q9H322 139 aa11.4□□□□□ -0.58
LIG1-204ENST00000542460 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.4□□□□□ -0.59
LIG1-204ENST00000542460 DNAH10Q8IVF4 4471 aa11.39□□□□□ -0.59
LIG1-204ENST00000542460 TRAV13-1A0A0B4J241 112 aa11.39□□□□□ -0.59
LIG1-204ENST00000542460 NUPR1O60356 82 aa11.39□□□□□ -0.59
LIG1-204ENST00000542460 FAM19A2Q8N3H0 131 aa11.39□□□□□ -0.59
LIG1-204ENST00000542460 OR10D4PQ8NGN7 298 aa11.39□□□□□ -0.59
LIG1-204ENST00000542460 CHCHD10Q8WYQ3 142 aaPredicted RBP11.39□□□□□ -0.59
LIG1-204ENST00000542460 AMELXQ99217 191 aa11.39□□□□□ -0.59
LIG1-204ENST00000542460 KRTAP26-1Q6PEX3 210 aa11.38□□□□□ -0.59
LIG1-204ENST00000542460 PRSS29PA6NIE9 313 aa11.37□□□□□ -0.59
LIG1-204ENST00000542460 ATP5LO75964 103 aa11.37□□□□□ -0.59
LIG1-204ENST00000542460 MAPKAPK5-AS1Q8N8E1 139 aa11.37□□□□□ -0.59
LIG1-204ENST00000542460 PACRGQ96M98 296 aaPredicted RBP11.37□□□□□ -0.59
LIG1-204ENST00000542460 HIST1H2BLQ99880 126 aa11.37□□□□□ -0.59
LIG1-204ENST00000542460 C2orf88Q9BSF0 95 aa11.37□□□□□ -0.59
LIG1-204ENST00000542460 XCL1P47992 114 aa11.36□□□□□ -0.59
LIG1-204ENST00000542460 TNP2Q05952 138 aa11.36□□□□□ -0.59
LIG1-204ENST00000542460 LINC00173Q6ZV60 143 aa11.36□□□□□ -0.59
LIG1-204ENST00000542460 GAGE12HA6NDE8 117 aa11.35□□□□□ -0.59
LIG1-204ENST00000542460 ZC2HC1BQ5TFG8 222 aa11.35□□□□□ -0.59
LIG1-204ENST00000542460 S100A12P80511 92 aa11.35□□□□□ -0.59
LIG1-204ENST00000542460 CD164L2Q6UWJ8 174 aa11.35□□□□□ -0.59
LIG1-204ENST00000542460 BAALCQ8WXS3 180 aa11.35□□□□□ -0.59
LIG1-204ENST00000542460 LRCOL1A6NCL2 159 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms