RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 C2orf88Q9BSF0 95 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 CST9LQ9H4G1 147 aa5.13□□□□□ -1.59
VPS53-205ENST00000541903 MRPL35Q9NZE8 188 aaKnown RBP5.13□□□□□ -1.59
VPS53-205ENST00000541903 PKD1L1Q8TDX9 2849 aa5.12□□□□□ -1.59
VPS53-205ENST00000541903 IGKCP01834 107 aa5.12□□□□□ -1.59
VPS53-205ENST00000541903 TIRAPP58753 221 aa5.12□□□□□ -1.59
VPS53-205ENST00000541903 PKIAP61925 76 aa5.12□□□□□ -1.59
VPS53-205ENST00000541903 LELP1Q5T871 98 aa5.12□□□□□ -1.59
VPS53-205ENST00000541903 PAM16Q9Y3D7 125 aa5.12□□□□□ -1.59
VPS53-205ENST00000541903 CSDC2Q9Y534 153 aaKnown RBP5.12□□□□□ -1.59
VPS53-205ENST00000541903 TRAV8-6A0A0B4J262 113 aa5.11□□□□□ -1.59
VPS53-205ENST00000541903 TMEM262E9PQX1 116 aa5.11□□□□□ -1.59
VPS53-205ENST00000541903 SPATA45Q537H7 98 aa5.11□□□□□ -1.59
VPS53-205ENST00000541903 RNASE13Q5GAN3 156 aaKnown RBP5.11□□□□□ -1.59
VPS53-205ENST00000541903 ZC2HC1BQ5TFG8 222 aa5.11□□□□□ -1.59
VPS53-205ENST00000541903 C15orf53Q8NAA6 179 aa5.11□□□□□ -1.59
VPS53-205ENST00000541903 AMELXQ99217 191 aa5.11□□□□□ -1.59
VPS53-205ENST00000541903 NBEAL1Q6ZS30 2694 aa5.1□□□□□ -1.59
VPS53-205ENST00000541903 IGLV4-69A0A075B6H9 119 aa5.1□□□□□ -1.59
VPS53-205ENST00000541903 hDV102S1A0JD36 115 aa5.1□□□□□ -1.59
VPS53-205ENST00000541903 TSTD3H0UI37 97 aa5.1□□□□□ -1.59
VPS53-205ENST00000541903 LYPD5Q6UWN5 251 aa5.1□□□□□ -1.59
VPS53-205ENST00000541903 ZNF664Q8N3J9 261 aa5.1□□□□□ -1.59
VPS53-205ENST00000541903 CHAC1Q9BUX1 264 aa5.1□□□□□ -1.59
VPS53-205ENST00000541903 A0A1B0GUV1 79 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 C11orf86A6NJI1 115 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 IGLC3P0DOY3 106 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 HERVK_113P61574 105 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 RBX1P62877 108 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 MAJINQ3KP22 176 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 NFE4Q86UQ8 179 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 FAM104AQ969W3 186 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 PRO1933Q9H354 126 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 GEMIN7Q9H840 131 aaKnown RBP5.09□□□□□ -1.59
VPS53-205ENST00000541903 CDC42SE2Q9NRR3 84 aa5.09□□□□□ -1.59
VPS53-205ENST00000541903 NBEAL2Q6ZNJ1 2754 aa5.09□□□□□ -1.6
VPS53-205ENST00000541903 IGLV4-60A0A075B6I1 120 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 TRAV13-1A0A0B4J241 112 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 A0A0J9YXV3 536 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 IGLL5B9A064 214 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 UBE2D1P51668 147 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 SEC11AP67812 179 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 MPV17L2Q567V2 206 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 TMEM170BQ5T4T1 132 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 STPG4Q8N801 248 aa5.08□□□□□ -1.6
VPS53-205ENST00000541903 IGKV3OR2-268A0A0C4DH90 116 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 TINCRA0A1B0GVN0 87 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 NUPR2A6NF83 97 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 PCP4L1A6NKN8 68 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 TCTAP57738 103 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 HERVK_113P63121 156 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 ESRGQ1W209 222 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 ANKRD39Q53RE8 183 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 LINC00469Q8N7U9 141 aa5.07□□□□□ -1.6
VPS53-205ENST00000541903 H3BRM9 83 aa5.06□□□□□ -1.6
VPS53-205ENST00000541903 ANGP03950 147 aaKnown RBP5.06□□□□□ -1.6
VPS53-205ENST00000541903 ZNF22P17026 224 aaPredicted RBP5.06□□□□□ -1.6
VPS53-205ENST00000541903 NMUP48645 174 aa5.06□□□□□ -1.6
VPS53-205ENST00000541903 CCL18P55774 89 aa5.06□□□□□ -1.6
VPS53-205ENST00000541903 WFDC10BQ8IUB3 73 aa5.06□□□□□ -1.6
VPS53-205ENST00000541903 UQCR10Q9UDW1 63 aa5.06□□□□□ -1.6
VPS53-205ENST00000541903 KLK5Q9Y337 293 aaPredicted RBP5.06□□□□□ -1.6
VPS53-205ENST00000541903 TENM3Q9P273 2699 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 IGLV5-45A0A087WSX0 123 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 TMEM223A0PJW6 202 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 E9PLD3 99 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 IGHV3-30P01768 117 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 IGHV3-33P01772 117 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 CRPP02741 224 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 IGHV3-30-3P0DP02 117 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 IGHV3-30-5P0DP03 117 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 COX8AP10176 69 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 SS18Q15532 418 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 LINC00242Q5T6M2 205 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 CLPSL2Q6UWE3 100 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 FAM19A3Q7Z5A8 133 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 LINC00269Q8N2A0 174 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 C14orf144Q96I85 54 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 MIEN1Q9BRT3 115 aa5.05□□□□□ -1.6
VPS53-205ENST00000541903 MRPS16Q9Y3D3 137 aaKnown RBP5.05□□□□□ -1.6
VPS53-205ENST00000541903 LINC00959A0A1B0GUT2 108 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 CCL25O15444 150 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 DDTP30046 118 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 HNRNPA3P51991 378 aaKnown RBP5.04□□□□□ -1.6
VPS53-205ENST00000541903 REG3AQ06141 175 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 SLC25A34Q6PIV7 304 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 Q8N3U1 123 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 PLEKHB2Q96CS7 222 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 KLK12Q9UKR0 248 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 LINC00588Q9Y4M8 146 aa5.04□□□□□ -1.6
VPS53-205ENST00000541903 IGHV3-64A0A075B6Q5 118 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 IGKV2D-26A0A0A0MRZ7 120 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 LEPROTO15243 131 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 SPINK8P0C7L1 97 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 LGALS3P17931 250 aaKnown RBP5.03□□□□□ -1.6
VPS53-205ENST00000541903 COX6A2Q02221 97 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 LINC01556Q5JQF7 62 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 UBE2DNLQ8IWF7 75 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 CDKN2A-AS1Q9UH64 79 aa5.03□□□□□ -1.6
VPS53-205ENST00000541903 HUWE1Q7Z6Z7 4374 aaKnown RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms